PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.32835s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 434aa    MW: 47975.4 Da    PI: 6.399
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.32835s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-08261281526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C+ f++ G C+ Gd+C +aHg
  Araha.32835s0001.1.p 261 PCPEFRK-GSCPKGDSCEYAHG 281
                           8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.46E-1430158IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.4E-1531180IPR020683Ankyrin repeat-containing domain
SMARTSM002487.8E-476106IPR002110Ankyrin repeat
PROSITE profilePS5029713.70876157IPR020683Ankyrin repeat-containing domain
PfamPF136373.2E-977129No hitNo description
CDDcd002043.58E-1278174No hitNo description
SMARTSM002484111143IPR002110Ankyrin repeat
SMARTSM003566.3E-5256282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976256283IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5261281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-6261282IPR000571Zinc finger, CCCH-type
SMARTSM0035642291314IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.305291315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MCGAKSNLCS SKTLTEVEFM RQKSEEGASA TCLLEFAACD DLSSFKREIE EKPSVEIDES  60
GFWYCRRVGS KKMGLEERTP LMVAAMYGSM EVLNYIIATG KSDVNRVCSD EKVTALHCAV  120
SGCSVSIVEI IKILLDASAS PNCVDANGNK PVDLLVKASR FVPNQSRKAV EVLLTGNHGS  180
VSLMEEEEEE VKSVVTKYPA DASLPDINEG VYGTDDFRMF SFKVKPCSRA YSHDWTECPF  240
VHPGENARRR DPRKYPYTCV PCPEFRKGSC PKGDSCEYAH GVFESWLHPA QYRTRLCKDE  300
TGCARRVCFF AHRSDELRPV NASTGSAMVS PRSSNQSPEM PVMSPLTLGS SPMNSPMANG  360
VPLSPRNGGL WQNRVNSLTP PPLQLNGSRL KSTLSARDMD MEMELRFRGL DNRRLGDLKP  420
SNLEETFGSY DSSA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.32835s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0852790.0AF085279.1 Arabidopsis thaliana ABA-regulated gene cluster, complete sequence.
GenBankAY0930160.0AY093016.1 Arabidopsis thaliana putative CCCH-type zinc finger protein (At2g40140) mRNA, complete cds.
GenBankAY1289370.0AY128937.1 Arabidopsis thaliana putative CCCH-type zinc finger protein (At2g40140) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883942.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A178VP720.0A0A178VP72_ARATH; ZFAR1
STRINGBostr.23794s0043.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein