PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.32525s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 260aa MW: 29383.2 Da PI: 8.3073 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.9 | 4.3e-28 | 137 | 197 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqK++ g+++prsYYrCt++ C+++k+v+rs++dp+++e+tY+g H+++ Araha.32525s0001.1.p 137 DDVFSWRKYGQKDILGAKYPRSYYRCTFRntqYCWATKQVQRSDSDPTIFEVTYRGIHTCS 197 8**************************998889**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.115 | 131 | 194 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.9E-27 | 132 | 197 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-24 | 135 | 197 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-37 | 136 | 198 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-25 | 137 | 196 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MEMMNWEHMN LLNELIHGLK AAKQLQASPS PSSSYLTTAM KETLLHNIVS SFEKAILMLN 60 GSTTQNIPMT ELAPDLLAHP GKVPESPTSI TGSPRSEEFF DVGSKDCNLS SKKRKMLPKW 120 TEQVRISPER GLEGPHDDVF SWRKYGQKDI LGAKYPRSYY RCTFRNTQYC WATKQVQRSD 180 SDPTIFEVTY RGIHTCSQGI PPPAKRETIP NHTVAINYQN NLLDNLRTNL TVRTTNGLEA 240 DTFSFPVTSP FYTYESINGG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-18 | 137 | 196 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.32525s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF442396 | 0.0 | AF442396.1 Arabidopsis thaliana WRKY transcription factor 41 (WRKY41) mRNA, complete cds. | |||
GenBank | AY133686 | 0.0 | AY133686.1 Arabidopsis thaliana clone C103116 (D) unknown protein (At4g11070) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002872545.1 | 1e-163 | probable WRKY transcription factor 41 | ||||
Swissprot | Q8H0Y8 | 1e-150 | WRK41_ARATH; Probable WRKY transcription factor 41 | ||||
TrEMBL | D7LYW1 | 1e-161 | D7LYW1_ARALL; WRKY DNA-binding protein 41 | ||||
STRING | fgenesh2_kg.6__3080__AT4G11070.1 | 1e-162 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1933 | 27 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G11070.1 | 1e-145 | WRKY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.32525s0001.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|