PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.32168s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 232aa MW: 26768.5 Da PI: 8.194 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 94 | 1e-29 | 51 | 150 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT................---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 f+k+ltpsdv+k++rlv+pkk+a +h g e+++++++d+ r+W+++++y+k+s+++v+t+GW++Fvk+ Araha.32168s0001.1.p 51 FQKELTPSDVGKLNRLVIPKKYAVKHmpfisddqsekeegeiG---GsvEDVEVVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNSFVKE 136 99*****************************997666655542...055999************************************* PP HT--TT-EEEEEE- CS B3 72 ngLkegDfvvFkld 85 ++Lke+D++vF+ Araha.32168s0001.1.p 137 KNLKEKDVIVFYTC 150 ***********943 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.2E-33 | 45 | 149 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.79E-28 | 49 | 150 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.44E-25 | 50 | 148 | No hit | No description |
Pfam | PF02362 | 5.9E-27 | 51 | 151 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.4E-23 | 51 | 162 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.266 | 51 | 173 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MIRDGSYPHK FRDFLRVRSQ IVASINIGGT KQVRGEVNQE SDKCFSCTQL FQKELTPSDV 60 GKLNRLVIPK KYAVKHMPFI SDDQSEKEEG EIGGSVEDVE VVFYDRAMRQ WKFRYCYWKS 120 SQSFVFTRGW NSFVKEKNLK EKDVIVFYTC DVPNNVKTLE GQSKTFLMID VHYFSDNGSV 180 VAEEVSMKVH DRSEEVMKTE NFVSSKLKDK DTKTEENKGG FMLFGVRIQC P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-27 | 47 | 147 | 10 | 100 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.32168s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079279 | 0.0 | AC079279.4 Arabidopsis thaliana chromosome 1 BAC F17J6 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002894269.2 | 1e-164 | AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Swissprot | Q9C6P5 | 1e-154 | RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
TrEMBL | D7KGR6 | 1e-163 | D7KGR6_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.1__4154__AT1G50680.1 | 1e-164 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1705 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 1e-156 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.32168s0001.1.p |