PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.3205s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 27491.7 Da PI: 6.3698 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.2 | 2.8e-20 | 65 | 113 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f taeeAa a+++a+ +l+g Araha.3205s0001.1.p 65 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDQAAFQLRG 113 9******9.**********965...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.721 | 64 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-22 | 64 | 122 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-37 | 64 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-32 | 64 | 122 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-14 | 65 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 65 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.74E-32 | 65 | 123 | No hit | No description |
PRINTS | PR00367 | 2.4E-11 | 87 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MTAIDYTSFG LNQPKPLGLN QLTPYQIHQI QNQLNHRRNT TSNLSPKPIR MKNFSPSSSK 60 TKNLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFETAEEA ALAYDQAAFQ LRGDITKLNF 120 PNLRHEDISP LPSSVDSKLQ AICKSLRKTE EACSVLDQTE EKYSVSGKTE HVLPKTEQLE 180 TKEFFDESPK SDENSSQAGY SSSDITLLDF SDSEFEEIGS FGLVKFPSVE IDWDAISKLS 240 DS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 65 | 121 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.3205s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007168 | 1e-178 | AC007168.5 Arabidopsis thaliana chromosome 2 clone T26C19 map mi238, complete sequence. | |||
GenBank | CP002685 | 1e-178 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020884845.1 | 1e-156 | ethylene-responsive transcription factor ERF056 | ||||
Swissprot | Q9SIE4 | 1e-137 | ERF56_ARATH; Ethylene-responsive transcription factor ERF056 | ||||
TrEMBL | D7LDD8 | 1e-153 | D7LDD8_ARALL; Uncharacterized protein | ||||
STRING | scaffold_400172.1 | 1e-154 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2680 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22200.1 | 1e-127 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.3205s0001.1.p |
Publications ? help Back to Top | |||
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