PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.31765s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 28519.6 Da PI: 5.653 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 6.1e-13 | 195 | 240 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++Le+AveY+k Lq Araha.31765s0001.1.p 195 SIAERLRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKALQ 240 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.862 | 189 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-16 | 192 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.86E-12 | 193 | 244 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-15 | 194 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 195 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-10 | 195 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MQSTHISGGS SGGGGGGGGG GGGEVSRSGL SRIRSAPATW IETLLEEEDE EEGLKPNLCL 60 TELLTGNNSG GVITSHEFPS SVEQGLYNYH HHQGGGFHRQ NSSPADFLSG SGVGTDGFFS 120 SFGIPANYDY LSTNVDISPT KRSRDMETQF SSQLKEEQMS GGVSGMMDMN MEKILEDSVP 180 CRVRAKRGCA THPRSIAERL RRTRISDRIR RLQELVPNMD KQTNTADMLE EAVEYVKALQ 240 SQIQELTEQQ KRCKCKPKEE Q* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00181 | DAP | Transfer from AT1G35460 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.31765s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF411791 | 0.0 | AF411791.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds. | |||
GenBank | AY093794 | 0.0 | AY093794.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002891184.1 | 1e-157 | transcription factor bHLH80 | ||||
Swissprot | Q9C8P8 | 1e-152 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | D7KL86 | 1e-156 | D7KL86_ARALL; Basic helix-loop-helix family protein | ||||
STRING | scaffold_103992.1 | 1e-157 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5104 | 25 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 1e-142 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.31765s0001.1.p |