PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.31673s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

SRS

Protein Properties

Length: 185aa MW: 20351.4 Da PI: 10.275

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.31673s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	155.8	2.8e-48	37	174	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 +g++ C+dCGn+akk+C +eRCRtCCksrg++C thvkstW+p++ +r+ +++ s+rk++lk +kqs+++ + l Araha.31673s0003.1.p 37 VGEKVCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATRS----------------SSSPSERKKKLKLDKQSSANVSLL 109 68999**************************************9998................345667777778899999999999 PP DUF702 92 ssaeskkeletss.lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 + ++s++e ++++ lP +++++avf+++rv+++++ +++e++Yq++v+i+GhvfkG+L+++G+++ Araha.31673s0003.1.p 110 PITTSRQERSFKEgLPGKIEAPAVFKRTRVTAISNnEQAEIGYQATVTISGHVFKGFLHYYGVDH 174 99999999988877***************9868899*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.2E-41	39	173	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.3E-27	41	82	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.9E-29	124	172	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MLGLRNIILL PPPPTQITTR PSPSPVNIAA VEDNNTVGEK VCRDCGNRAK KECLFERCRT 60 CCKSRGYNCV THVKSTWIPS SATRSSSSPS ERKKKLKLDK QSSANVSLLP ITTSRQERSF 120 KEGLPGKIEA PAVFKRTRVT AISNNEQAEI GYQATVTISG HVFKGFLHYY GVDHNKAFPC 180 LSQK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.31673s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF446889	0.0	AF446889.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.
GenBank	AY052675	0.0	AY052675.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020879621.1	1e-122	protein SHI RELATED SEQUENCE 6
Swissprot	Q9M2U4	1e-117	SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBL	D7LUT8	1e-120	D7LUT8_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.5__1835__AT3G54430.1	1e-121	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	1e-100	SHI-related sequence 6

Link Out ? help Back to Top
Phytozome	Araha.31673s0003.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]