PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3134s0023.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 295aa    MW: 34451.8 Da    PI: 8.0242
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3134s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-1671116147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v+ +G+ +W++Ia++++ gR++k+c++rw++ 
  Araha.3134s0023.1.p  71 RGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 116
                          899*****************************.***********996 PP
2Myb_DNA-binding59.48.1e-19123166146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++++k++w+ 
  Araha.3134s0023.1.p 123 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNSVKNHWHV 166
                          678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.63766117IPR017930Myb domain
SuperFamilySSF466894.87E-2969164IPR009057Homeodomain-like
SMARTSM007177.5E-1470119IPR001005SANT/Myb domain
PfamPF002494.4E-1671116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2672124IPR009057Homeodomain-like
CDDcd001673.55E-1274115No hitNo description
PROSITE profilePS5129427.112118172IPR017930Myb domain
SMARTSM007174.1E-15122170IPR001005SANT/Myb domain
PfamPF002491.1E-15123165IPR001005SANT/Myb domain
CDDcd001671.48E-11125165No hitNo description
Gene3DG3DSA:1.10.10.601.2E-21125171IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSEDQHRWMD QIASSDYFSL NIDNAQHIRS YYASHREEDM NPNLSDYSNC NKKDTTVYGS  60
CGNSSKASVS RGHWRPAEDT KLKELVAVYG PQNWNLIAEK LQGRSGKSCR LRWFNQLDPR  120
INRRAFTEEE EERLMQAHRL YGNKWAMIAR LFPGRTDNSV KNHWHVIMAR KFREQSSAYR  180
RRKTMLPLKP LINHNPHLFN DFDPTRLGLT HLVSNDQKQL MLPIPCFPGY DHGNESPLIV  240
DMFQSEMMVG EYIAWTQEST TFDFLNQTGK SEMFERMNEE KKPPFFDFLG LGTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-33691725108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3134s0023.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2493080.0AF249308.1 Arabidopsis thaliana putative transcription factor (MYB105) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887243.20.0LOW QUALITY PROTEIN: transcription factor MYB105
SwissprotQ9SEZ40.0MY105_ARATH; Transcription factor MYB105
TrEMBLD7KXG80.0D7KXG8_ARALL; MYB105
STRINGfgenesh2_kg.2__1220__AT1G69560.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.10.0myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]