PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.31309s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ARF | ||||||||
Protein Properties | Length: 755aa MW: 82839.8 Da PI: 6.7926 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76 | 4.2e-24 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Araha.31309s0002.1.p 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLF 215 99*****************************8544444..48*********************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++++ +l+++++r+ Araha.31309s0002.1.p 216 I--WNDKNQLLLGIRRA 230 *..7888889****997 PP | |||||||
2 | Auxin_resp | 118.3 | 6.2e-39 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp+rW nS+Wrs+k Araha.31309s0002.1.p 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVK 338 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.31E-48 | 114 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-42 | 122 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.39E-21 | 128 | 229 | No hit | No description |
Pfam | PF02362 | 3.8E-22 | 129 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-24 | 129 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.464 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.0E-34 | 255 | 338 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.7E-8 | 604 | 704 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.16E-7 | 606 | 690 | No hit | No description |
PROSITE profile | PS51745 | 23.537 | 615 | 699 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 755 aa Download sequence Send to blast |
MRLSSAGFNP QPHEVSGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN 60 KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNAQEQK DPYLPAELGV 120 PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK 180 FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS 240 VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF 300 RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP 360 LTTFPMYPSP FPLRLKRPWP PGLPSFHGIV NFKTCAAVVS AMSQFGSASH SNTSPLQSMT 420 SLCHQQSFSD TNGGNNPISP LHTLLSNFSQ DESSQLLNLT RTNSAMTSSG WPSKRPAVDS 480 SFQHSGAGNN NTQSVLEQLG QSHTSNIPPN AVSLPPFPGG RECSIEQEGS ASDPHSHLLF 540 GVNIDSSSLL MPNGMSNLRS IGIEGGDSTT LPFTSSNFNN DFSGNLAMTT PSSCIDESGF 600 LQSSENLGSE NPQSNTFVKV YKSGSFGRSL DISKFSSYHE LRSELARMFG LEGQLEDPVR 660 SGWQLVFVDR ENDVLLLGDD PWPAFVSSVW CIKILSPQEV QQMGKRGLEL LNSAPSSNNV 720 DKLPSNGNCD DFGNRSDPRN LGNGIASVGG SFNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 18 | 359 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.31309s0002.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY669788 | 0.0 | AY669788.1 Arabidopsis thaliana clone C105343 ARF6 (At1g30330) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022012443.1 | 0.0 | auxin response factor 8-like isoform X2 | ||||
Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | A0A3N6UE96 | 0.0 | A0A3N6UE96_BRACR; Auxin response factor | ||||
STRING | Cagra.1508s0171.1.p | 0.0 | (Capsella grandiflora) | ||||
STRING | fgenesh2_kg.1__3210__AT1G30330.2 | 0.0 | (Arabidopsis lyrata) | ||||
STRING | XP_006306714.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1344 | 28 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Araha.31309s0002.1.p |