PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.3107s0001.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 401aa MW: 44662.5 Da PI: 4.4767 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.6 | 5.6e-33 | 234 | 288 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe Fv+av+qLGGs+kAtPk +l++mkv+gLt++hvkSHLQkYR Araha.3107s0001.2.p 234 KGRMRWTPELHEVFVDAVNQLGGSNKATPKGVLKHMKVQGLTIYHVKSHLQKYRQ 288 56****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.778 | 231 | 291 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.45E-18 | 233 | 288 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-30 | 233 | 289 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-24 | 234 | 289 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.6E-10 | 236 | 287 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.3E-20 | 320 | 364 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MIPNDDDDDA NRPLRSIPND DDDDDDANCP LRSIPNDDEL SHNFSLIPSL PNPSEAAEMS 60 SNSEHHQLMA NPYHLLSENG GAVGHIYSSD LRNPFVEPGF NIASPTSFVP ETSDWIPSPL 120 PDIFDFPSGS PIQIMDDGVI DEIHKQSDLP VWDDHLITGE DSLMSAVLED LLLDTNFNSS 180 ASKVQQLNTQ SQIQQPQVVL PQPSPCVELR PLVRTVSSNS NNSNNSNNAA AAAKGRMRWT 240 PELHEVFVDA VNQLGGSNKA TPKGVLKHMK VQGLTIYHVK SHLQKYRQAK YIPEPSEGQP 300 ETKLTPLEQI TSDDTRRGID VTEALRIQME LQKKLHEQLE IQRTMQLRIE EQGKALLMMF 360 EKQNMGFGKP EQEDRTSAKT PENGSEDSDS PRPKRPRNEE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-29 | 233 | 291 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-29 | 233 | 291 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-29 | 234 | 291 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-29 | 234 | 291 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-29 | 234 | 291 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-29 | 234 | 291 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-29 | 233 | 291 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-29 | 233 | 291 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-29 | 233 | 291 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-29 | 233 | 291 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-29 | 233 | 291 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-29 | 233 | 291 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in male gametophyte development. {ECO:0000269|PubMed:22101548}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00111 | ampDAP | Transfer from AT2G20400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.3107s0001.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118313 | 0.0 | AK118313.1 Arabidopsis thaliana At2g20400 mRNA for unknown protein, complete cds, clone: RAFL19-59-J02. | |||
GenBank | BT006119 | 0.0 | BT006119.1 Arabidopsis thaliana clone U50843 unknown protein (At2g20400) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002884199.1 | 0.0 | myb family transcription factor PHL4 isoform X2 | ||||
Swissprot | Q8GXC2 | 0.0 | PHL4_ARATH; Myb family transcription factor PHL4 | ||||
TrEMBL | D7L3M9 | 0.0 | D7L3M9_ARALL; Uncharacterized protein | ||||
STRING | scaffold_304362.1 | 0.0 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20400.1 | 1e-178 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.3107s0001.2.p |
Publications ? help Back to Top | |||
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