PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.3107s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 402aa MW: 44733.6 Da PI: 4.4767

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.3107s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.6	5.6e-33	234	288	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe Fv+av+qLGGs+kAtPk +l++mkv+gLt++hvkSHLQkYR Araha.3107s0001.1.p 234 KGRMRWTPELHEVFVDAVNQLGGSNKATPKGVLKHMKVQGLTIYHVKSHLQKYRQ 288 56****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.778	231	291	IPR017930	Myb domain
SuperFamily	SSF46689	6.45E-18	233	288	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-30	233	289	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-24	234	289	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-10	236	287	IPR001005	SANT/Myb domain
Pfam	PF14379	5.4E-20	321	365	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MIPNDDDDDA NRPLRSIPND DDDDDDANCP LRSIPNDDEL SHNFSLIPSL PNPSEAAEMS 60 SNSEHHQLMA NPYHLLSENG GAVGHIYSSD LRNPFVEPGF NIASPTSFVP ETSDWIPSPL 120 PDIFDFPSGS PIQIMDDGVI DEIHKQSDLP VWDDHLITGE DSLMSAVLED LLLDTNFNSS 180 ASKVQQLNTQ SQIQQPQVVL PQPSPCVELR PLVRTVSSNS NNSNNSNNAA AAAKGRMRWT 240 PELHEVFVDA VNQLGGSNKA TPKGVLKHMK VQGLTIYHVK SHLQKYRQAK YIPEPSEAGQ 300 PETKLTPLEQ ITSDDTRRGI DVTEALRIQM ELQKKLHEQL EIQRTMQLRI EEQGKALLMM 360 FEKQNMGFGK PEQEDRTSAK TPENGSEDSD SPRPKRPRNE E*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MIPNDDDDDA NRPLRSIPND DDDDDDANCP LRSIPNDDEL SHNFSLIPSL PNPSEAAEMS  60
SNSEHHQLMA NPYHLLSENG GAVGHIYSSD LRNPFVEPGF NIASPTSFVP ETSDWIPSPL  120
PDIFDFPSGS PIQIMDDGVI DEIHKQSDLP VWDDHLITGE DSLMSAVLED LLLDTNFNSS  180
ASKVQQLNTQ SQIQQPQVVL PQPSPCVELR PLVRTVSSNS NNSNNSNNAA AAAKGRMRWT  240
PELHEVFVDA VNQLGGSNKA TPKGVLKHMK VQGLTIYHVK SHLQKYRQAK YIPEPSEAGQ  300
PETKLTPLEQ ITSDDTRRGI DVTEALRIQM ELQKKLHEQL EIQRTMQLRI EEQGKALLMM  360
FEKQNMGFGK PEQEDRTSAK TPENGSEDSD SPRPKRPRNE E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-29	233	291	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-29	233	291	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-29	234	291	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-29	234	291	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-29	234	291	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-29	234	291	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-29	233	291	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-29	233	291	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-29	233	291	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-29	233	291	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-29	233	291	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-29	233	291	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in male gametophyte development. {ECO:0000269\|PubMed:22101548}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00111	ampDAP	Transfer from AT2G20400	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.3107s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118313	0.0	AK118313.1 Arabidopsis thaliana At2g20400 mRNA for unknown protein, complete cds, clone: RAFL19-59-J02.
GenBank	BT006119	0.0	BT006119.1 Arabidopsis thaliana clone U50843 unknown protein (At2g20400) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020887251.1	0.0	myb family transcription factor PHL4 isoform X1
Swissprot	Q8GXC2	0.0	PHL4_ARATH; Myb family transcription factor PHL4
TrEMBL	D7L3M9	0.0	D7L3M9_ARALL; Uncharacterized protein
STRING	scaffold_304362.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20400.1	1e-176	G2-like family protein

Link Out ? help Back to Top
Phytozome	Araha.3107s0001.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]