PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3105s0024.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 257aa    MW: 29175.8 Da    PI: 7.9298
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3105s0024.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF922.9e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien   rqvtfskRr g+lKKA+ELSvLCdaevavi+fs++gkl+e+ss
  Araha.3105s0024.2.p  9 KRIENANSRQVTFSKRRSGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSS 59
                         79***********************************************96 PP
2K-box78.91.3e-26731665100
                K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                          +  s +++kae+ + e++ Lk+e+++Lq+++ +l+G++L+ L++keL++LeqqL ++l ++R++K++ l++q+ee++ ke++++ en++L
  Araha.3105s0024.2.p  73 Q--SSSDSKAEEDCAEVDLLKDELSKLQEKHLQLQGKGLNILTFKELHNLEQQLYHALITVRERKERWLTNQLEESRLKEQQAELENETL 160
                          3..3578999******************************************************************************** PP

                K-box  95 rkklee 100
                          r++++e
  Araha.3105s0024.2.p 161 RRQVQE 166
                          ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.955161IPR002100Transcription factor, MADS-box
SMARTSM004327.0E-43160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-33278IPR002100Transcription factor, MADS-box
CDDcd002657.43E-45276No hitNo description
PRINTSPR004042.0E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-303859IPR002100Transcription factor, MADS-box
PfamPF014869.0E-1875164IPR002487Transcription factor, K-box
PROSITE profilePS5129712.53680170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRGKIEIKR IENANSRQVT FSKRRSGLLK KAHELSVLCD AEVAVIVFSK SGKLFEFSST  60
GMKKTLSRYG NHQSSSDSKA EEDCAEVDLL KDELSKLQEK HLQLQGKGLN ILTFKELHNL  120
EQQLYHALIT VRERKERWLT NQLEESRLKE QQAELENETL RRQVQELRSF LPSFTHYVPS  180
YIKCFAIDPK NAVINHGCLD DSECSLQKTN SDTTLQLGLP GEAHDRRKNE GDRESPSSDS  240
VTTNTTRETA QRISLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-24186186MEF2C
5f28_B2e-24186186MEF2C
5f28_C2e-24186186MEF2C
5f28_D2e-24186186MEF2C
6byy_A2e-24186186MEF2 CHIMERA
6byy_B2e-24186186MEF2 CHIMERA
6byy_C2e-24186186MEF2 CHIMERA
6byy_D2e-24186186MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Acts as both an activator and a repressor of transcription. Binds DNA in a sequence-specific manner in large CArG motif 5'-CC (A/T)8 GG-3'. Participates probably in the regulation of programs active during the early stages of embryo development. Prevents premature perianth senescence and abscission, fruits development and seed desiccation. Stimulates the expression of at least DTA4, LEC2, FUS3, ABI3, AT4G38680/CSP2 and GRP2B/CSP4. Can enhance somatic embryo development in vitro. {ECO:0000269|PubMed:10318690, ECO:0000269|PubMed:10662856, ECO:0000269|PubMed:12226488, ECO:0000269|PubMed:12743119, ECO:0000269|PubMed:14615187, ECO:0000269|PubMed:15084721, ECO:0000269|PubMed:15686521, ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18305206, ECO:0000269|PubMed:19269998, ECO:0000269|PubMed:19767455, ECO:0000269|PubMed:8953767}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3105s0024.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (2,4-D). Feedback loop leading to direct down-regulation by itself. {ECO:0000269|PubMed:15686521}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU201850.0U20185.1 Arabidopsis thaliana MADS-box protein AGL15 (AGL15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873627.10.0agamous-like MADS-box protein AGL15 isoform X2
SwissprotQ388471e-166AGL15_ARATH; Agamous-like MADS-box protein AGL15
TrEMBLD7M5W40.0D7M5W4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__1336__AT5G13790.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-168AGAMOUS-like 15
Publications ? help Back to Top
  1. Zheng Q,Zheng Y,Perry SE
    Decreased GmAGL15 expression and reduced ethylene synthesis may contribute to reduced somatic embryogenesis in a poorly embryogenic cultivar of Glycine max.
    Plant Signal Behav, 2014.
    [PMID:23838957]
  2. Perry SE,Zheng Q,Zheng Y
    Transcriptome analysis indicates that GmAGAMOUS-Like 15 may enhance somatic embryogenesis by promoting a dedifferentiated state.
    Plant Signal Behav, 2016. 11(7): p. e1197463
    [PMID:27302197]
  3. Cosio C, et al.
    The class III peroxidase PRX17 is a direct target of the MADS-box transcription factor AGAMOUS-LIKE15 (AGL15) and participates in lignified tissue formation.
    New Phytol., 2017. 213(1): p. 250-263
    [PMID:27513887]
  4. Zheng Q,Zheng Y,Ji H,Burnie W,Perry SE
    Gene Regulation by the AGL15 Transcription Factor Reveals Hormone Interactions in Somatic Embryogenesis.
    Plant Physiol., 2016. 172(4): p. 2374-2387
    [PMID:27794101]
  5. Chen N,Veerappan V,Abdelmageed H,Kang M,Allen RD
    HSI2/VAL1 Silences AGL15 to Regulate the Developmental Transition from Seed Maturation to Vegetative Growth in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 600-619
    [PMID:29475938]