PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3093s0018.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 302aa    MW: 34513.8 Da    PI: 4.9265
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3093s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.7e-161663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEd +l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
  Araha.3093s0018.1.p 16 RGPWSPEEDIKLISFIQKFGHENWRSLPKQSGLLRCGKSCRLRWINYL 63
                         89******************************99************97 PP
2Myb_DNA-binding54.13.7e-1769114148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T eE+e ++++++ +G++ W++Ia+ ++ gRt++++k+ w+++l
  Araha.3093s0018.1.p  69 RGNFTLEEEETIIKLHHNYGNK-WSKIASQLP-GRTDNEIKNVWHTHL 114
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-24766IPR009057Homeodomain-like
PROSITE profilePS5129415.2071163IPR017930Myb domain
SuperFamilySSF466899.71E-3014110IPR009057Homeodomain-like
SMARTSM007174.5E-131565IPR001005SANT/Myb domain
PfamPF002491.2E-141663IPR001005SANT/Myb domain
CDDcd001672.35E-91863No hitNo description
PROSITE profilePS5129425.98864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2767119IPR009057Homeodomain-like
SMARTSM007179.3E-1568116IPR001005SANT/Myb domain
PfamPF002499.1E-1669114IPR001005SANT/Myb domain
CDDcd001674.92E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGKGRAPCCD KTKVKRGPWS PEEDIKLISF IQKFGHENWR SLPKQSGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTLEEEETI IKLHHNYGNK WSKIASQLPG RTDNEIKNVW HTHLKKRLVQ  120
SSGTADEPAS PCSSGSVSRG KDDKSSQVED YLNRENNQES SSRNELSTSL SSGGSNHSNQ  180
QDDPKITFEF IEEAYSEFND IIQEVDKPDL LEIPFDSDPD IWSFLDTSNS FQQSTANENS  240
SGSRTTEEES DEEEVKKWFK HLESELGLEE DDDQQQHKQG TQHKEEESSS SLLKTYELMI  300
H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24161187108B-MYB
1gv2_A3e-24161184105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-23161279159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-23161279159MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-24161184105C-Myb DNA-Binding Domain
1msf_C4e-24161184105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3093s0018.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1753440.0AK175344.1 Arabidopsis thaliana mRNA for putative transcription factor (MYB63), complete cds, clone: RAFL21-78-M22.
GenBankAY5195720.0AY519572.1 Arabidopsis thaliana MYB transcription factor (At1g79180) mRNA, complete cds.
GenBankBT0331250.0BT033125.1 Arabidopsis thaliana unknown protein (At1g79180) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891713.10.0transcription factor MYB63
SwissprotQ6R0A61e-180MYB63_ARATH; Transcription factor MYB63
TrEMBLD7KVY90.0D7KVY9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__2216__AT1G79180.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.11e-146myb domain protein 63
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  3. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]