PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2977s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 309aa    MW: 34363 Da    PI: 5.8875
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2977s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-1262103346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          ++T eE++l+++ ++ +G++ W +Ia++++ g+t++++k +w++
  Araha.2977s0006.1.p  62 SFTSEEEDLIIKMHAAMGSR-WQLIAQHLP-GKTEEEVKMFWNT 103
                          79******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500903.926551IPR017877Myb-like domain
SuperFamilySSF466893.59E-1342112IPR009057Homeodomain-like
PROSITE profilePS5129417.24555109IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-1757109IPR009057Homeodomain-like
SMARTSM007171.9E-1359107IPR001005SANT/Myb domain
CDDcd001679.34E-1062105No hitNo description
PfamPF002492.2E-1162103IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVRSCSSKSK NPWTNEEDTA QKFMFAPVSK NGSAAPKKIG LRRCGKSCRV RKTDHSGTKH  60
ESFTSEEEDL IIKMHAAMGS RWQLIAQHLP GKTEEEVKMF WNTKLKKKLS EMGIDHVTHR  120
PFSHVLAEYG NINGGGNLNP NPLNQAGSLG RNHSLNDDDH QQQQPDDSGD LMFHLQAIKL  180
MTESSNQVKP ESTFVYASSS SSNSSPPLFS STCSTIAQEN LEVNFTWSDF LLDQETFHEN  240
QQNHPQELDS LFGNDFSEAA AATTTNSSTV ARNIEEESSC NGFVESIIAK EKELFLGSPS  300
YLEQPFHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-12101097108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00148DAPTransfer from AT1G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2977s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934660.0AB493466.1 Arabidopsis thaliana At1g18960 mRNA for hypothetical protein, partial cds, clone: RAAt1g18960.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870013.10.0transcription factor MYB35
TrEMBLA0A178WJ390.0A0A178WJ39_ARATH; Uncharacterized protein
STRINGAT1G18960.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18960.11e-169MYB_related family protein