PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.29023s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 539aa    MW: 60600.2 Da    PI: 7.3319
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.29023s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.41.7e-2022981195
                          HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                    B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                          + s+ l +p kf+++h +  k+e+kt+ l++  s r+W+vk+  ++++    lt+GWkeFv+a++L++gDfvvF+++g++ f  +v+
  Araha.29023s0002.1.p 22 FHSH-LNIPVKFLSDHiK-GKHEGKTVNLRSdASERTWKVKM--EGNR----LTQGWKEFVEAHDLRVGDFVVFRHEGEMLF--HVT 98
                          4455.99*********64.456889*****97889*******..9998....***********************9887766..555 PP
2B360.62.6e-19142239899
                           -HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   8 sdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                           sd ++ ++ +++++ ++++        g++ke+ +++ l++e+g++We +l++++   r  + +GW +F+ an+L++gD+++F+l +++
  Araha.29023s0002.1.p 142 SDQSSPNLNCFSRSVTASNlsrdrvqnGLNKER-QEIFLMNEEGKTWESELKIWGDC-RLSIVRGWTSFCTANKLEVGDSCTFRLLQKT 228
                           555555655666666666667777776888876.5****************999986.788999*********************9999 PP

                           EE..EEEEE-S CS
                    B3  89 efelvvkvfrk 99 
                            +++v++++++
  Araha.29023s0002.1.p 229 AETPVFQLCSR 239
                           999******98 PP
3B336.67.8e-122603372098
                           HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  20 kkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           ++f++e+ +++++  +++l d++  +W+++l+++k+ g   ++ ++GWk+F+ an++ +g++++++l++  + ++++k+ +
  Araha.29023s0002.1.p 260 NRFTRENRLINPG--KIVLVDKNKAEWSMELKVDKSTGLmyIISGNGWKHFCAANEIGAGESLILELIR-GGVTPLLKFSS 337
                           5799999888555..7***************998888776444569*********************98.67777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-266105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-2410109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.67611103IPR003340B3 DNA binding domain
CDDcd100172.18E-211298No hitNo description
SMARTSM010193.1E-2714103IPR003340B3 DNA binding domain
PfamPF023627.0E-152494IPR003340B3 DNA binding domain
PfamPF023621.0E-17142239IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-16145238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-17147240IPR015300DNA-binding pseudobarrel domain
CDDcd100177.43E-16151233No hitNo description
SMARTSM010197.1E-18152240IPR003340B3 DNA binding domain
PROSITE profilePS5086312.562161239IPR003340B3 DNA binding domain
SMARTSM010194.1E-11249339IPR003340B3 DNA binding domain
PfamPF023621.5E-10260337IPR003340B3 DNA binding domain
CDDcd100171.61E-12261335No hitNo description
PROSITE profilePS5086310.715261338IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-12261338IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-13261338IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MANASPLSRT SPHFFQPLLP GFHSHLNIPV KFLSDHIKGK HEGKTVNLRS DASERTWKVK  60
MEGNRLTQGW KEFVEAHDLR VGDFVVFRHE GEMLFHVTAL GPSCCEIQYA QPRRHEEDEE  120
SNETEVPSRS EKEVDENVKT ESDQSSPNLN CFSRSVTASN LSRDRVQNGL NKERQEIFLM  180
NEEGKTWESE LKIWGDCRLS IVRGWTSFCT ANKLEVGDSC TFRLLQKTAE TPVFQLCSRT  240
KSERKIQSAE GCIDDKTGGN RFTRENRLIN PGKIVLVDKN KAEWSMELKV DKSTGLMYII  300
SGNGWKHFCA ANEIGAGESL ILELIRGGVT PLLKFSSKMD QPPFEAEAQA HKRARVQKLS  360
QETEPKLDMR EKTAEDGEPS RASNKSSGNQ ENLQHTQPCS VSNQVAKVKQ SVVDALTSFR  420
RFRAELDTTE QKLEISLQEI NNLERTEDNG NKTTTSSKPG ATLAKGPLAS EKQSTLPLPT  480
KDGPPKDFNL SANIFTAVRK LRTDLVREAP DGVMAYHIFM AKVSKYGDRL LETIETTVN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.29023s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872301.10.0B3 domain-containing protein REM8
SwissprotQ8H2D10.0REM8_ARATH; B3 domain-containing protein REM8
TrEMBLD7MB410.0D7MB41_ARALL; Uncharacterized protein
STRINGscaffold_701042.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]