PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.27996s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YA
Protein Properties Length: 340aa    MW: 37742.1 Da    PI: 9.9518
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.27996s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.7e-32180235258
             CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           ep++VNaKQy++I++RRq+Rakle+++kl +++rkpylheSRh hAl+RpRgsgGrF
  Araha.27996s0003.1.p 180 EPVFVNAKQYHAIMRRRQQRAKLEAQNKL-IRARKPYLHESRHVHALKRPRGSGGRF 235
                           9****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.5E-38177238IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.757178238IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.2E-27180235IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.9E-24181203IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860183203IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.9E-24212235IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MMHQMMNKKD SATHSTLPYL NTSISWGVVP TDSIVNRRGS TESSRSLKMD ARPELIQTTK  60
QISFQDQDSS STQSTGQSYT EVASSEDDNP SRQISFSAKS GSEVTQRKGF ASNPKPGLMT  120
GFPNIHFAPA QANFSFHYAD PHYGGLLAAT YLPQAPTCNP QMMSMIPGRV PLPAELTETE  180
PVFVNAKQYH AIMRRRQQRA KLEAQNKLIR ARKPYLHESR HVHALKRPRG SGGRFLNTKK  240
LLQEAEQAAR EQENDKSDQQ GNRKTNMSRF EAHMLHSKDR GSTNSGSDIT SVSDGADIFG  300
HTEFQFSGFP NPTNRAMLVH GQSNDMHGGG DMHHFSVHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19180239362NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.27996s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1400280.0AY140028.1 Arabidopsis thaliana CCAAT-binding factor B subunit-like protein, putative (At1g72830) mRNA, complete cds.
GenBankBT0088250.0BT008825.1 Arabidopsis thaliana At1g72830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888894.20.0nuclear transcription factor Y subunit A-3
SwissprotQ93ZH20.0NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLD7KR420.0D7KR42_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_20015970.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.10.0nuclear factor Y, subunit A3