PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.27935s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 603aa    MW: 68046.8 Da    PI: 7.094
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.27935s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.27.6e-104644962254
                           SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           ++yp+ ++++ LA+++gL+ +qV++WF N R +
  Araha.27935s0002.1.p 464 HPYPTDSDKQMLATQTGLSRNQVSNWFINARVR 496
                           89*****************************88 PP
2BELL94.11.3e-30335403472
                  BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           +++ k+akLl l+eeV+k+Yk y++qlqtv+s+F++vagl +a+pY+slAlk++Sr+F++L++ i+e++
  Araha.27935s0002.1.p 335 KNRLKRAKLLFLQEEVCKWYKLYNHQLQTVMSAFNTVAGLRTATPYISLALKRTSRSFKALRTGISEHV 403
                           5789*************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-54270401IPR006563POX domain
PfamPF075268.7E-27275400IPR006563POX domain
PROSITE profilePS5007112.066437500IPR001356Homeobox domain
CDDcd000862.31E-11440501No hitNo description
SMARTSM003893.9E-10440504IPR001356Homeobox domain
SuperFamilySSF466898.55E-17442506IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-27443504IPR009057Homeodomain-like
PfamPF059201.5E-18457496IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MDMIKPELHV VQQIRRDKFR VEQLNDFPNT WNHHHQQQNQ NIRIPNNLDL IGILQNQISV  60
PVQTDLYQDS TTTFMTMPQS IHRDPQGSSN WRSNDLSQPS TVNCSVVNYG YDEAGIRPSN  120
VGDLFSNHFN SRNQILDRPL YVGRDTIAQS SMTRRSEVSC LDDNQKGCVT VACSGTGNEI  180
LKSSYDQGSS SGSYRGEFAF LPRLENQSVA HNASQWNHKP LNFTAPSDTN KKGFPLSLLS  240
EIPPSRDVGN AAVSCTMNIH GHLGPLGPFT GYASILKSSR FLEPAQKMLE EFCISYASRI  300
ISRSESTSMD DDDDDDDDDD NSSVFSSSYE PVEPKNRLKR AKLLFLQEEV CKWYKLYNHQ  360
LQTVMSAFNT VAGLRTATPY ISLALKRTSR SFKALRTGIS EHVKQISSHS SSGDNNGFQK  420
TQRSLIGNNV GFESQQQHMW RPQRGLPEPA VAVLRAWLFD HFLHPYPTDS DKQMLATQTG  480
LSRNQVSNWF INARVRLWKP MVEEIHTLET KAIKNQDTSH NMEPSNRLNT VSSTPSHEQT  540
LTDLSGTKRS RLEYMDMMGF NRGNVSLTLE LRRGVDNVIQ TQTQTQDHQF GTGGQMFHDF  600
VG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15446504563Homeobox protein Meis2
3k2a_B2e-15446504563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for specifying floral primordia and establishing early internode patterning events during inflorescence development. {ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.27935s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0059210.0BT005921.1 Arabidopsis thaliana At2g27990 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883787.10.0BEL1-like homeodomain protein 8 isoform X2
SwissprotQ9SJJ30.0BLH8_ARATH; BEL1-like homeodomain protein 8
TrEMBLD7LIG60.0D7LIG6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__769__AT2G27990.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143211520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.10.0BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]