PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2755s0010.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 347aa    MW: 40606.9 Da    PI: 9.8312
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2755s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.41.2e-101250442
                         -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         e    r +++ k r g+lKK +EL +LCd++ + iifs+
  Araha.2755s0010.1.p 12 EKAKSRATSLQKMRVGLLKKVKELTILCDVRTLAIIFSP 50
                         5667899******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.937149IPR002100Transcription factor, MADS-box
SMARTSM004328.9E-16160IPR002100Transcription factor, MADS-box
CDDcd002662.40E-22286No hitNo description
SuperFamilySSF554554.58E-15295IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-4323IPR002100Transcription factor, MADS-box
PfamPF003195.6E-101251IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-42338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MTRKKVKLAW VEKAKSRATS LQKMRVGLLK KVKELTILCD VRTLAIIFSP YKAEPMVWPS  60
VVAATHGLLG EFFALPKLVQ KKKESSVESY LKEKTQKIHE QLMKSNKKKK DYVIDELMMQ  120
LQNNRRIADL NLREIYALLS FSRDTILLCR KKLNFMQFPP LRDPPVFPFE IQVKEFKTIT  180
NDIFVGQDNE RAGRTDVATR RINVDIFKVN KSYYLFDHWV FPSRPPKPEI HQQMGNENPN  240
PKSYCLYQGS NSNGNPHLEM DLIRFQMMTS HISQPLQHHN MITNSMMAMN QPRQYPFDFM  300
SHELEINEEE NNTNKFNNTT MTNDGLPQEI AHNETTVWLD FNNHHF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2755s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885147.10.0uncharacterized protein LOC110229407
TrEMBLA0A178VQF21e-170A0A178VQF2_ARATH; AGL48
TrEMBLQ9XEF11e-170Q9XEF1_ARATH; AGAMOUS-like 48
STRINGAT2G40210.11e-171(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.11e-166AGAMOUS-like 48