PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.27509s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 482aa    MW: 53957.7 Da    PI: 6.3475
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.27509s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS5245.1e-160544781374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lLl+cA++v+sg+l++a+a+L++ls+la+pdgd+mqR+aayfte+La+r+++s+++lykal++++ +++n+see++++klf+e++P
  Araha.27509s0002.1.p  54 LIHLLLTCANHVASGSLQNANAALEQLSHLAAPDGDTMQRIAAYFTEGLANRILKSWPGLYKALNATQIRTNNVSEEIHVRKLFFEMFP 142
                           689************************************************************************************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                           ilk+s+l++N+aIlea+ege++vH+iD+d+s+++QW+aL+qa++sRpegpp+lRiTgv++    +ke le++++rL + Ae+l++pf+f
  Araha.27509s0002.1.p 143 ILKVSYLLTNRAILEAMEGEKMVHVIDLDASEPAQWLALIQAFNSRPEGPPHLRITGVHH----QKEVLEQMAHRLIEEAEKLDIPFQF 227
                           ************************************************************....9************************ PP

                  GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrll..................................................... 214
                           n+ v+ rl++l++e+Lrvk+gEalaV++vlqlh++l                                                     
  Araha.27509s0002.1.p 228 NP-VVCRLDCLNVEQLRVKTGEALAVSSVLQLHTFLasdddlmrkncalrfqnnpsgvdlqrvlmmshgsaaeahendmsnngyspsgd 315
                           **.6899*********************************************************************************9 PP

                  GRAS 215 .desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                            ++s++l+s  ++d +L+++++lsPkv+vv+eq++dhn+++++er+le+l++y+alfd+le+k+pr+s++rikvE++l+g+ei+n++ac
  Araha.27509s0002.1.p 316 sASSLPLPSsgRTDGFLNAIWGLSPKVMVVTEQDSDHNGSTLMERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMLFGEEIKNIIAC 404
                           977777777779***************************************************************************** PP

                  GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           eg+errerhe+lekW++r++ aGF++vpls++a+ qa++ll+ +++dgyr++eesg++v++W+drpL+s+SaWr
  Araha.27509s0002.1.p 405 EGFERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQARRLLQGCGFDGYRIKEESGCAVICWQDRPLYSISAWR 478
                           *************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.52828458IPR005202Transcription factor GRAS
PfamPF035141.7E-15754478IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT  60
CANHVASGSL QNANAALEQL SHLAAPDGDT MQRIAAYFTE GLANRILKSW PGLYKALNAT  120
QIRTNNVSEE IHVRKLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA  180
LIQAFNSRPE GPPHLRITGV HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VCRLDCLNVE  240
QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA  300
HENDMSNNGY SPSGDSASSL PLPSSGRTDG FLNAIWGLSP KVMVVTEQDS DHNGSTLMER  360
LLESLYTYAA LFDCLETKVP RTSQDRIKVE KMLFGEEIKN IIACEGFERR ERHEKLEKWS  420
QRIDLAGFGN VPLSYYAMLQ ARRLLQGCGF DGYRIKEESG CAVICWQDRP LYSISAWRCR  480
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-39384802380Protein SCARECROW
5b3h_D3e-39384802380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.27509s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0125610.0AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence.
GenBankAY0561540.0AY056154.1 Arabidopsis thaliana putative scarecrow 3 protein (At1g50420) mRNA, complete cds.
GenBankAY0912600.0AY091260.1 Arabidopsis thaliana putative scarecrow 3 protein (At1g50420) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867111.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLD7KFZ50.0D7KFZ5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__4122__AT1G50420.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]