PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.26853s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 89aa MW: 10255 Da PI: 5.8215 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.4 | 3.9e-11 | 4 | 44 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Araha.26853s0001.1.p 4 QKRRERINERLRILQHLVPNG-----TKVDISTMLEEAVQYVKFLQ 44 89*****************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.132 | 1 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-12 | 4 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-7 | 4 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.95E-10 | 4 | 48 | No hit | No description |
SuperFamily | SSF47459 | 1.11E-13 | 4 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-8 | 4 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MMVQKRRERI NERLRILQHL VPNGTKVDIS TMLEEAVQYV KFLQLQIKLL SSDDLWMYAP 60 IAYNGMDIGL DLKLNALIPD DSRDTFGF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.26853s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ577584 | 1e-111 | AJ577584.1 Arabidopsis thaliana mRNA for putative bHLH084 transcription factor (bHLH084 gene). | |||
GenBank | DQ446497 | 1e-111 | DQ446497.1 Arabidopsis thaliana clone pENTR221-At2g14760 basic helix-loop-helix protein/bHLH protein (At2g14760) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001189527.1 | 4e-49 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q7XHI9 | 2e-47 | BH084_ARATH; Transcription factor bHLH84 | ||||
TrEMBL | F4IGG9 | 9e-48 | F4IGG9_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | ||||
STRING | AT2G14760.3 | 1e-48 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2834 | 26 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.3 | 5e-41 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.26853s0001.1.p |