PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.2637s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 119aa MW: 13383.8 Da PI: 5.9745 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.5 | 9e-10 | 70 | 94 | 3 | 25 |
AP2 3 ykGVrwdkkrgrWvAeIrdpse...n 25 y+GVr+++ +g+W+AeIrdp++ n Araha.2637s0003.1.p 70 YRGVRQRP-WGKWAAEIRDPNKaarN 94 9*******.**********9665533 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 0.0012 | 69 | 109 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-4 | 69 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-6 | 69 | 90 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 11.219 | 69 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-11 | 69 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MHSGKRPLSP ESMAGKREEK KELCCCSTLS ESDVSAFVSE LTEQPTPPSM DDQSSSLTLQ 60 EQSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARNGDEEDL EKKERCLGEC PDRSRQPT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00289 | DAP | Transfer from AT2G33710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.2637s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY136456 | 1e-126 | AY136456.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds. | |||
GenBank | BT000236 | 1e-126 | BT000236.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020882861.1 | 1e-59 | ethylene-responsive transcription factor ERF112 | ||||
Swissprot | P93007 | 4e-57 | EF112_ARATH; Ethylene-responsive transcription factor ERF112 | ||||
TrEMBL | D7LGD1 | 4e-58 | D7LGD1_ARALL; AP2 domain-containing transcription factor family protein (Fragment) | ||||
STRING | fgenesh2_kg.4__1380__AT2G33710.1 | 6e-59 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 2e-59 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.2637s0003.1.p |