PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2632s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 625aa    MW: 68020.6 Da    PI: 5.3745
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2632s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.6e-06357377525
                          --SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                          +C++f   G+C++Gd+C F+H
  Araha.2632s0004.1.p 357 PCNNFITKGFCHRGDSCLFSH 377
                          7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.939298325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6298323IPR000571Zinc finger, CCCH-type
SMARTSM003560.012299324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4302323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.99327354IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017327353IPR000571Zinc finger, CCCH-type
SMARTSM003562.7355379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6356381IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.789357380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
IAQASPGETY EPPENLSTVE SKSNGVTGDL RCEKVETNSQ EKSLMLGDVF DGIDLQDASV  60
GSRHTDFFDS FELMINENQD FVPDSCVNLF EALNVNDYDG NGMVASLDDI AKQPLDIVEN  120
VVEKLNIESE VQVDPVGGDK KAEEVPKSVE SNEVRSSGVL EACDETVQRE MELEKPVDSS  180
QVLVDSVSRI VEHDDVEEGE ISGDDNDDML VGDDEPVERH EESQVSRDGI GNSHLTSHES  240
FGKELGVEMD PGTSIKKRSA PSKDAKARKR AKARKKRAQE RIALGVKKLK LKPVAPKPKP  300
IKYCRHYLKG RCHEGDKCKF SHDTTPETKS SPCCYFATQS CMKGDDCPFD HDLSKYPCNN  360
FITKGFCHRG DSCLFSHKGT PQSASDTPSA NVTASSTNIT TASFSPQKTN KQSVREAIAK  420
LPGIQARVSS SVGFLKPLSH SNQRNSSDAS SPKINELVTP PQVPPLRKPS VAPKGMSFLS  480
LDKTSQEDTV KPSPASKPNT DNPDNQTLKQ SQQGSSLPLV PPKGISFLSF ASEEPKTLNR  540
EPQEPSSSRN LKTTPSSHIQ SSLLSAMKLA AEFESAKVER RNNDPTEAVN KSNVTTVNTT  600
VTRNSGNISS KILEFLSSFS QGKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255276KKRSAPSKDAKARKRAKARKKR
2266272ARKRAKA
3267289RKRAKARKKRAQERIALGVKKLK
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2632s0004.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240350.0AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866173.10.0zinc finger CCCH domain-containing protein 65
SwissprotQ9LTS70.0C3H65_ARATH; Zinc finger CCCH domain-containing protein 65
TrEMBLD7MM850.0D7MM85_ARALL; EMB1789
STRINGscaffold_802252.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121601516