PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.2632s0002.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 173aa MW: 19732.7 Da PI: 10.4006 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.4 | 9.2e-12 | 3 | 45 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++f+ Lr+llP+ +K +Ka++L A e ++sLq Araha.2632s0002.2.p 3 SERKRREKLNESFQALRSLLPPG-----TKKDKASVLSIAREQLSSLQ 45 6********************97.....8**************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.253 | 1 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.5E-13 | 1 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-14 | 2 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.26E-8 | 2 | 49 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.4E-13 | 2 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-9 | 3 | 45 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MISERKRREK LNESFQALRS LLPPGTKKDK ASVLSIAREQ LSSLQGEISK LLERNRKLEA 60 KLAGERDIIN DLLPNERFNV HISHISESTS RERILDLRVV LRGDSIRVDD LMIRLLEFLK 120 QINNVSLVSI EARTRARDTS VVLVSLRLKI EGEWDESAFQ EAVRRVVADL AH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 8 | ERKRRE |
2 | 4 | 9 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.2632s0002.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB024035 | 1e-123 | AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17. | |||
GenBank | CP002688 | 1e-123 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879239.1 | 1e-112 | putative transcription factor bHLH041 | ||||
Swissprot | Q9LTS4 | 1e-100 | BH041_ARATH; Putative transcription factor bHLH041 | ||||
TrEMBL | D7MM88 | 1e-112 | D7MM88_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0008_2143 | 1e-112 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 1e-102 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.2632s0002.2.p |
Publications ? help Back to Top | |||
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