PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.2627s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GRF | ||||||||
Protein Properties | Length: 222aa MW: 25404 Da PI: 9.6902 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76 | 4e-24 | 111 | 154 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRC ++v++++k+CE+Hlhrgr rsrk++e+ Araha.2627s0001.1.p 111 LEPGRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHVEP 154 69***************************************997 PP | |||||||
2 | QLQ | 52.1 | 2e-18 | 62 | 93 | 2 | 33 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 +FT+aQl +L++Q+++yKy++a+ PvP +Ll+ Araha.2627s0001.1.p 62 PFTNAQLKELERQAMIYKYMIASIPVPFDLLV 93 9*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.1E-10 | 61 | 97 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.8E-11 | 62 | 92 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.186 | 62 | 97 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.345 | 110 | 154 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.8E-19 | 112 | 153 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MDFLKVSDKT TNPCRSDSLF SLNQQQYKES SFGFRDMEIH PHPHLTTPYS GNGVLGCYYY 60 YPFTNAQLKE LERQAMIYKY MIASIPVPFD LLVSSSSSAS PCNNKNIAGD LEPGRCRRTD 120 GKKWRCAKEV VSNHKYCEKH LHRGRPRSRK HVEPPYSRPN NNGGSVKNRD LKNLPRKLSN 180 SSIKDKTLEP MEVSSSISNY RESRYCSLKC LRVILCFCSL F* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.2627s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493791 | 0.0 | AB493791.1 Arabidopsis thaliana At5g53660 mRNA for hypothetical protein, partial cds, clone: RAAt5g53660. | |||
GenBank | AK176109 | 0.0 | AK176109.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL22-89-N21. | |||
GenBank | BT010882 | 0.0 | BT010882.1 Arabidopsis thaliana At5g53660 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002864265.1 | 1e-146 | growth-regulating factor 7 | ||||
Swissprot | Q9FJB8 | 1e-140 | GRF7_ARATH; Growth-regulating factor 7 | ||||
TrEMBL | D7MT20 | 1e-145 | D7MT20_ARALL; AtGRF7 | ||||
STRING | scaffold_801857.1 | 1e-146 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12106 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53660.1 | 1e-138 | growth-regulating factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Araha.2627s0001.1.p |
Publications ? help Back to Top | |||
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