PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.26186s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NF-YA | ||||||||
Protein Properties | Length: 265aa MW: 29366.9 Da PI: 9.093 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 89.4 | 4.9e-28 | 134 | 186 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+Rak+e+ l +++rkpy+h+SRh hA+rRpRgsgGrF Araha.26186s0008.1.p 134 GTIYVNSKQYHGIIRRRQSRAKAEK---L-SRCRKPYMHHSRHLHAMRRPRGSGGRF 186 689*********************9...6.888***********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.6E-30 | 131 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 32.025 | 132 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 7.7E-24 | 135 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 137 | 157 | IPR018362 | CCAAT-binding factor, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MQTEELLSPP QTPWWNAFGS HPLTTESLSG DASDSFTGVK AVTPETEQGV VDKQSSTTLL 60 TFSPGGGKSS RDVPKPHVAF AMQSACFEFG FAQPMIYTKH PHVEQYYGVV SAYGSQRSSG 120 RLMLPLKMET EEDGTIYVNS KQYHGIIRRR QSRAKAEKLS RCRKPYMHHS RHLHAMRRPR 180 GSGGRFLNTK TADAAKQSKP SNSQSSEVFH LENRTINSSR GSNLSDSIVT SMDYFLSSSV 240 YSPETMPIKW NAAEMDISCC DLNT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-15 | 136 | 200 | 5 | 72 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
4g91_A | 2e-15 | 136 | 193 | 5 | 63 | HAPB protein |
4g92_A | 2e-15 | 136 | 193 | 5 | 63 | HAPB protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.26186s0008.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY084643 | 0.0 | AY084643.1 Arabidopsis thaliana clone 114015 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002871220.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
Swissprot | Q8LFU0 | 0.0 | NFYAA_ARATH; Nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | D7LZR1 | 0.0 | D7LZR1_ARALL; CCAAT-binding transcription factor (CBF-B/NF-YA) family protein | ||||
STRING | scaffold_600636.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 0.0 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Araha.26186s0008.1.p |
Publications ? help Back to Top | |||
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