PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2511s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 361aa    MW: 38807.8 Da    PI: 5.1574
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2511s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS45.21.6e-14267354295
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          +++++e+A+a+++g++e a+++Lar+s+  + ++++ ++l+ +++ AL++r+++     +++l++ + +e   +e+l +++l++e+sP++
  Araha.2511s0001.1.p 267 RQTVMEIATAIAEGKTEIATEILARVSQSPNLERSSEEKLVDFMVTALRSRINQ-----AESLASPA-TELYGKEHLISTQLLNELSPCF 350
                          6889*************************************************9.....44443333.345699**************** PP

                 GRAS  92 kfsh 95 
                          k+ +
  Araha.2511s0001.1.p 351 KLDF 354
                          *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035145.4E-12267354IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MESGFSGGGG GSDFYGGGGR SIPGGPGTVI NVGNNNPQPT YRNQIPGIFL DQIGNRVAAG  60
NGFAGKRTLA DFQAAQQHQQ QQQQQHPFYN QAALNAFLLR SVKPRNYQNF QSPSPTIDLT  120
SVNDMSLFGG SGSSQRYGSP VLKSQTQQHQ SNFGLFGGIR MGYGSSNNNN MTLTGVPCIE  180
PVQHNRVHES ENMLNSLREL EKQLLDDDDE SGGDDDVSVI TNSNSDWIQN LVTPNPNPNP  240
VLSFSPTSSS SSSSPSTAST TTSVCSRQTV MEIATAIAEG KTEIATEILA RVSQSPNLER  300
SSEEKLVDFM VTALRSRINQ AESLASPATE LYGKEHLIST QLLNELSPCF KLDFLPRKIT  360
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2511s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0003780.0AP000378.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:T4M5.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868578.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-166SCL8_ARATH; Scarecrow-like protein 8
TrEMBLD7MS570.0D7MS57_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__1135__AT5G52510.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-148SCARECROW-like 8