PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.24857s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 303aa    MW: 35062.2 Da    PI: 8.5649
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.24857s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1578e-49221502128
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                            pGfrFhPtdeelv +yL kkv  kk  +++e+++++diyk++PwdLp + +++eke yfF+kr +ky+++ r+nr+t sg+Wkatg d
  Araha.24857s0004.1.p  22 LPGFRFHPTDEELVGYYLSKKVLLKKpSKIDEIVSQIDIYKFDPWDLP-RSRNTEKESYFFCKRGRKYRNSIRPNRVTGSGFWKATGID 109
                           59*******************887764788888***************.5567789********************************* PP

                   NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k+++s   +++++glkktLv+y g+a kg+ktdW+mhe+rl
  Araha.24857s0004.1.p 110 KPIYSDgsNKAVIGLKKTLVYYLGSAGKGSKTDWMMHEFRL 150
                           *****9767777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-5021185IPR003441NAC domain
PROSITE profilePS5100550.8721185IPR003441NAC domain
PfamPF023656.5E-2523150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEKMIESRDN TRESEDEEVL KLPGFRFHPT DEELVGYYLS KKVLLKKPSK IDEIVSQIDI  60
YKFDPWDLPR SRNTEKESYF FCKRGRKYRN SIRPNRVTGS GFWKATGIDK PIYSDGSNKA  120
VIGLKKTLVY YLGSAGKGSK TDWMMHEFRL PTANDTIPGG PTHSNPTPTS LLHAEVWTLC  180
RIFKRNVSSR KYTPDWRELA NGKRVKQQQS NYQEAYINFA DNESSSSTNV INVMEGKGNY  240
ERSVFQLQQT PYQHHNQPIL MDTTHVDSFQ HFSNDNIHHE TYENWDELRS VVEFAFPPSS  300
LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-442319119171NO APICAL MERISTEM PROTEIN
1ut4_B7e-442319119171NO APICAL MERISTEM PROTEIN
1ut7_A7e-442319119171NO APICAL MERISTEM PROTEIN
1ut7_B7e-442319119171NO APICAL MERISTEM PROTEIN
3swm_A7e-442319122174NAC domain-containing protein 19
3swm_B7e-442319122174NAC domain-containing protein 19
3swm_C7e-442319122174NAC domain-containing protein 19
3swm_D7e-442319122174NAC domain-containing protein 19
3swp_A7e-442319122174NAC domain-containing protein 19
3swp_B7e-442319122174NAC domain-containing protein 19
3swp_C7e-442319122174NAC domain-containing protein 19
3swp_D7e-442319122174NAC domain-containing protein 19
4dul_A7e-442319119171NAC domain-containing protein 19
4dul_B7e-442319119171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.24857s0004.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266451e-178AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6.
GenBankCP0026861e-178CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187897.20.0NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
SwissprotQ9SK552e-72NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLQ9LSI40.0Q9LSI4_ARATH; NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
STRINGAT3G12910.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.10.0NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]