PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.2482s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 100aa MW: 11085.5 Da PI: 8.5267 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.5 | 1.4e-32 | 47 | 100 | 2 | 54 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHR 54 ++v+YkeClkNhAa++Ggha+DGCgEfmps++++ ++++++kCaACgCHRnFHR Araha.2482s0003.1.p 47 NTVTYKECLKNHAAAIGGHALDGCGEFMPSPSSTpSDPTSFKCAACGCHRNFHR 100 689******************************99******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.2E-27 | 49 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-15 | 49 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-29 | 50 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.19 | 51 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MLEVRSMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRR HHHHHHNTVT YKECLKNHAA 60 AIGGHALDGC GEFMPSPSST PSDPTSFKCA ACGCHRNFHR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.2482s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117188 | 1e-139 | AK117188.1 Arabidopsis thaliana mRNA, clone: RAFL16-72-M15. | |||
GenBank | AP002049 | 1e-139 | AP002049.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYI13. | |||
GenBank | AY093171 | 1e-139 | AY093171.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds. | |||
GenBank | AY128820 | 1e-139 | AY128820.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds. | |||
GenBank | CP002686 | 1e-139 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010425683.1 | 2e-54 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LHF0 | 4e-49 | ZHD9_ARATH; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A1J3GXX5 | 8e-55 | A0A1J3GXX5_NOCCA; Zinc-finger homeodomain protein 9 (Fragment) | ||||
STRING | XP_010425683.1 | 9e-54 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 3e-38 | homeobox protein 34 |
Link Out ? help Back to Top | |
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Phytozome | Araha.2482s0003.1.p |
Publications ? help Back to Top | |||
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