PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.24789s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 296aa MW: 32073.1 Da PI: 10.1191 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 94.2 | 1.5e-29 | 136 | 195 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +++YVN+KQy++I++RRq+Rak+++ +kkl++++rkpy+h+SRh hAlrRpRgsgGrF Araha.24789s0002.1.p 136 STIYVNSKQYHGIIRRRQSRAKAAAvldQKKLSSRCRKPYMHHSRHLHALRRPRGSGGRF 195 78**********************9999*******************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.3E-31 | 133 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.959 | 134 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.6E-21 | 137 | 159 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 6.2E-24 | 137 | 195 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.6E-21 | 172 | 195 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 296 aa Download sequence Send to blast |
MAMQTVREGL FSAPQTSWWT AFGSQPLAPE SLPGDSDSFA SVKVGSVGET GQGVDKQSNS 60 ATHLAFSLGD VKSPRLVPKP HGATFSLQSP CLELGFTQPP IYTKYPYGEP QYYGVVSAYG 120 SQSRVMLPLT METEDSTIYV NSKQYHGIIR RRQSRAKAAA VLDQKKLSSR CRKPYMHHSR 180 HLHALRRPRG SGGRFLNTKS QNLEKNGTNA KKADGSMQIQ SQPKPQQSNS QNSEVVHPEN 240 GTMNLSNGLN VSGSEVTSMN YFLSSPVHSL GGMVMPSKWI AAAAGMDNGC SNFKT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 4e-16 | 135 | 196 | 2 | 60 | HAPB protein |
4g92_A | 4e-16 | 135 | 196 | 2 | 60 | HAPB protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.24789s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT026062 | 0.0 | BT026062.1 Arabidopsis thaliana At3g05690 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020888748.1 | 0.0 | nuclear transcription factor Y subunit A-2 | ||||
Refseq | XP_020888749.1 | 0.0 | nuclear transcription factor Y subunit A-2 | ||||
Refseq | XP_020888750.1 | 0.0 | nuclear transcription factor Y subunit A-2 | ||||
Swissprot | Q9M9X4 | 0.0 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | D7L4M5 | 0.0 | D7L4M5_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.3__563__AT3G05690.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G05690.1 | 0.0 | nuclear factor Y, subunit A2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.24789s0002.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|