PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.24635s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 209aa    MW: 22916.6 Da    PI: 10.0185
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.24635s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83e-162671555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Araha.24635s0006.1.p 26 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 71
                          9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-191982IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.8152170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-142671IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-182680IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.39E-162675No hitNo description
SMARTSM003537.4E-182776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEDEEEKKAG GKSSVSTKRS RAAAIHNQSE RKRRDKINQR MKTLQKLVPN SSKTDKASML  60
DEVIEYLKQL QAQVSMMSRM NMPSMMLPMA MQQQLQMSLM TSNPMGLGIG MGMPGLGLLD  120
LNSMNRAAAA ATAPNIHANV MPNPFAPMTC PSWDASSNDA RFQSPLIPDP MSAFLACSST  180
QPTTMEAYSR MAALYQQMQQ QLPPSNPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12934ERKRRD
23035RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.24635s0006.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172290.0AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08.
GenBankBT0259710.0BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426522.11e-126PREDICTED: transcription factor UNE10-like
SwissprotQ8GZ383e-96UNE10_ARATH; Transcription factor UNE10
TrEMBLD7M5T41e-121D7M5T4_ARALL; Uncharacterized protein
STRINGXP_010426522.11e-125(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]