PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2431s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 359aa    MW: 40666.4 Da    PI: 9.7347
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2431s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.17.8e-082272691759
                          HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                          A+rsR RK+++i eLe+ v++L+ae ++   el+ l++    l
  Araha.2431s0002.1.p 227 AQRSRVRKLQYISELERNVQTLQAEGSKVSAELDFLNQRNLIL 269
                          89*******************************9999876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0052216275IPR004827Basic-leucine zipper domain
CDDcd147031.74E-14219266No hitNo description
SuperFamilySSF579596.88E-6227269No hitNo description
Gene3DG3DSA:1.20.5.1705.9E-7227269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MASSKGSQSV RNLMYPGKHA LLPPKIPFPS VSASYSEYIP SGLIGSRHGQ KLNDEKTHHQ  60
RTSSESHLVE ELPFWLDDLL NEPESPARKC GHRRSSSDSY AYLDVANATN ISLTLQNDFS  120
YRNTVSSTQR GIQELDRNKN AQDAAFYSDA NFLKQKSRQR DSLVASGARP SWLPFARENA  180
TVITERKNYA EPLSHDPKML SFEENNSNPP PVTYEADNTK RAKQQFAQRS RVRKLQYISE  240
LERNVQTLQA EGSKVSAELD FLNQRNLILS MENKALKQRL ETIAQEKLIK QLEQELLEKE  300
IGRLRALYQQ QQQTPKPSAT RGRASSKDLD SQFSSLSLNT KDSNCRRDSV SVMGQFHF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2431s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0039800.0BT003980.1 Arabidopsis thaliana clone RAFL15-22-D03 (R20596) putative bZIP family transcription factor (At1g58110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888232.20.0uncharacterized protein At4g06598 isoform X1
RefseqXP_020891575.10.0uncharacterized protein At4g06598 isoform X2
RefseqXP_020891576.10.0uncharacterized protein At4g06598 isoform X3
SwissprotQ8W3M72e-61Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBLD7KY870.0D7KY87_ARALL; Predicted protein
STRINGAl_scaffold_0002_6820.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33602444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.20.0bZIP family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]