PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.23900s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 345aa MW: 39927.2 Da PI: 7.5906

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.23900s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.8	2.2e-06	247	270	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+Cp+C+++F ++ + Hi++ H Araha.23900s0001.1.p 247 YTCPKCNRVFDTSQKFAAHISSmH 270 9*******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.61E-5	245	273	No hit	No description
SMART	SM00355	0.003	247	270	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.93	247	275	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	249	270	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MTSIPNGLYS YGDDTMNIHG FTPIEMMSSN LRNHESKIVQ SMFNTSDHTN HHGLFSSSRA 60 FNSYQDSHVS SSSFDFSNSH MSYHMRKNMV STFGMPCITQ FSNNPHLSQI SITQTITNSY 120 SAIVPTNNLI TSQNEYERAM NPNIFNSPLY PPNFVDKHVE KESEILNPTP LNTIFPHQTS 180 IFRRNLDMFS FSPKHHPHQY VSYRQPVKKH CGPTKHFEET FDDFDSKENS EYDGRTHSLP 240 YKKYGPYTCP KCNRVFDTSQ KFAAHISSMH YKNETIEEKF KRYNARNKKR SRETNQMIHE 300 ESRNNIQPEE RVAKGNGSNN NIASDIETLQ HQQIVKEEPI NDLF*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MTSIPNGLYS YGDDTMNIHG FTPIEMMSSN LRNHESKIVQ SMFNTSDHTN HHGLFSSSRA  60
FNSYQDSHVS SSSFDFSNSH MSYHMRKNMV STFGMPCITQ FSNNPHLSQI SITQTITNSY  120
SAIVPTNNLI TSQNEYERAM NPNIFNSPLY PPNFVDKHVE KESEILNPTP LNTIFPHQTS  180
IFRRNLDMFS FSPKHHPHQY VSYRQPVKKH CGPTKHFEET FDDFDSKENS EYDGRTHSLP  240
YKKYGPYTCP KCNRVFDTSQ KFAAHISSMH YKNETIEEKF KRYNARNKKR SRETNQMIHE  300
ESRNNIQPEE RVAKGNGSNN NIASDIETLQ HQQIVKEEPI NDLF*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00523	DAP	Transfer from AT5G22990	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.23900s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ131517	0.0	AJ131517.1 Arabidopsis thaliana MYB37 homologue gene and ORF1.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002874106.1	0.0	uncharacterized protein LOC9308097
TrEMBL	D7M1L5	0.0	D7M1L5_ARALL; Zinc finger family protein
STRING	scaffold_602360.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1924	19	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22990.1	1e-180	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Araha.23900s0001.1.p