PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.23705s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CO-like
Protein Properties Length: 380aa    MW: 41849.3 Da    PI: 5.2931
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.23705s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.4e-06444539
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                          +C+ ++e++   +C+++   lC +C  + H+       H++
  Araha.23705s0002.1.p  4 MCDFCDEQRSMVYCRSDAASLCLSCDRNVHSAnalskrHSR 44
                          6*****************************65677777765 PP
2zf-B_box21.83.8e-074691440
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.........Htvv 40
                           +C++++ ++++  C d ++ lC++C   +H g         H+++
  Araha.23705s0002.1.p 46 LVCERCNAQPASVRCSDERVSLCQNCDWLGHDGknsttttshHKRQ 91
                          68*****************************667788888877765 PP
3CCT59.51.2e-20322365144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R++a++RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ 
  Araha.23705s0002.1.p 322 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 365
                           99***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.783147IPR000315B-box-type zinc finger
CDDcd000211.21E-6447No hitNo description
SMARTSM003365.7E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.1434393IPR000315B-box-type zinc finger
CDDcd000211.72E-54793No hitNo description
PfamPF062032.5E-15322364IPR010402CCT domain
PROSITE profilePS5101715.1322364IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGYMCDFCDE QRSMVYCRSD AASLCLSCDR NVHSANALSK RHSRTLVCER CNAQPASVRC  60
SDERVSLCQN CDWLGHDGKN STTTTSHHKR QTINCYSGCP SSAELSSIWS FFMDLNISSS  120
GESACEQGMG LMTIDEDGTG EKPGVPNVNV DQPETSSAAQ GMDHSSVPEN SSLAKELGVC  180
EDDFNGNLIT DEVDLALENY EELFGSAFNS SRYLFEHGGI GSLFEKDEAP EDSTQGNAMQ  240
QPAVSNNASA DSFMTCITEP IICYLSKPTH SNISFSGITG ESNAGDFQDC GASSMKQLLR  300
EPQPWCHPTA QDIIASSHAT TRNNAVMRYK EKKKARKFDK RVRYVSRKER ADVRRRVKGR  360
FVKSGEAYDY DPMSPTRSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.23705s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0399570.0AY039957.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds.
GenBankAY1426070.0AY142607.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865623.10.0zinc finger protein CONSTANS-LIKE 10
SwissprotQ9LUA90.0COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLD7MLL30.0D7MLL3_ARALL; Zinc finger (B-box type) family protein
STRINGscaffold_801118.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]