PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2369s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 327aa    MW: 37392.2 Da    PI: 8.978
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2369s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.13.2e-251968251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         + +++s +++++s+R+++i+KKA+EL++LCd+e++vi+++++g+l+++++
  Araha.2369s0003.1.p 19 SCSSYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYGPDGELKTWPK 68
                         6789********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.001169IPR002100Transcription factor, MADS-box
PROSITE profilePS512575120No hitNo description
PfamPF003194.3E-142766IPR002100Transcription factor, MADS-box
CDDcd002662.34E-182794No hitNo description
PROSITE profilePS500669.6992870IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-1528102IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MTIRSLPSSS CCSSSSSSSC SSYSLASTSL SNRLETIFKK ASELCTLCDI EACVIYYGPD  60
GELKTWPKEK EKVRDMALKY SQLNEALRRK KRVNLYDFLN KKKNKGLKNP NKKRKTSLKK  120
VNELKYPISD HYSPDQISKL IQSLELNVSK VQERLRFVES QKHKETKPDR QSLASSSLNH  180
QTQSLKPSQF SLFMYNHGDN TLSQIPVSAS NFNPALLQES GLMKQELCGY DQNMFMSDIT  240
NNKFQHPCVS NTEHYSVVPE PVNNYGLNQL MQKEFYGCDQ KLSNINSNNF QHAFVSNTQH  300
YSAVQESVNN YGLMPHELYG YDQNMFT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100114KKKNKGLKNPNKKRK
2101113KKNKGLKNPNKKR
3106114LKNPNKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2369s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0100720.0AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBankBT0300160.0BT030016.1 Arabidopsis thaliana At5g41200 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870726.20.0agamous-like MADS-box protein AGL75
SwissprotQ9FLL01e-148AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLD7MJH90.0D7MJH9_ARALL; Uncharacterized protein
STRINGscaffold_704060.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.11e-146AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]