PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.2341s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

HSF

Protein Properties

Length: 443aa MW: 50228.9 Da PI: 7.0116

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.2341s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	97.6	1.2e-30	1	84	9	101
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 +++d+++++++sws+n+nsf+v+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF ++ F k++k+ll++i+ Araha.2341s0003.1.p 1 MVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFLNDDFIKDQKHLLKNIH 81 899*****************************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Araha.2341s0003.1.p 82 RRK 84 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	4.3E-31	1	83	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.0E-26	1	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.14E-29	1	83	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.4E-47	1	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.8E-10	32	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	33	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.8E-10	45	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MVDDSSTDQI VSWSANNNSF IVWNHAEFSR LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE 60 RWEFLNDDFI KDQKHLLKNI HRRKPIHSHS HPPSSSTDQE RAVLQEQMDK LSREKAAIEA 120 KLLKFKQQKA VAKHQFEEMT EHVDDMEKRQ KKLLNFLETA IRNPTFVKNF GRKVEQLDIS 180 AYNKKRRLPE VEQSKPPSED SHLDNSSGSS RRESGNIFHQ NFSNKLRLEL SPAVSDMNMV 240 SHSIQSSNEE GGSPKGILSG GDPKTTLTRR EGLPFAPEAL ELADTGTCPR RLLLNDITRV 300 ETLQQRLTSS EETDGSFSCH LNLTLASAPL PEKTASQLAK TTLKSQEIGR CTELNFNSIE 360 TSASEKNRGR QEVAVGGSQA NAAPPARVND VFWEQFLTER PGSSDNEEAS STYRGNPDEE 420 QEERRNGNMM SRNTKNIEQL TL*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MVDDSSTDQI VSWSANNNSF IVWNHAEFSR LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE  60
RWEFLNDDFI KDQKHLLKNI HRRKPIHSHS HPPSSSTDQE RAVLQEQMDK LSREKAAIEA  120
KLLKFKQQKA VAKHQFEEMT EHVDDMEKRQ KKLLNFLETA IRNPTFVKNF GRKVEQLDIS  180
AYNKKRRLPE VEQSKPPSED SHLDNSSGSS RRESGNIFHQ NFSNKLRLEL SPAVSDMNMV  240
SHSIQSSNEE GGSPKGILSG GDPKTTLTRR EGLPFAPEAL ELADTGTCPR RLLLNDITRV  300
ETLQQRLTSS EETDGSFSCH LNLTLASAPL PEKTASQLAK TTLKSQEIGR CTELNFNSIE  360
TSASEKNRGR QEVAVGGSQA NAAPPARVND VFWEQFLTER PGSSDNEEAS STYRGNPDEE  420
QEERRNGNMM SRNTKNIEQL TL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	8e-20	1	83	36	129	Heat shock factor protein 1
5d5v_B	8e-20	1	83	36	129	Heat shock factor protein 1
5d5v_D	8e-20	1	83	36	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.2341s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY039528	0.0	AY039528.1 Arabidopsis thaliana AT4g13980/dl3030c mRNA, complete cds.
GenBank	BT001056	0.0	BT001056.1 Arabidopsis thaliana At4g13980/dl3030c mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020874977.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	0.0	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	D7MH90	0.0	D7MH90_ARALL; AT-HSFA5
STRING	fgenesh2_kg.7__2946__AT4G13980.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10134	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	0.0	HSF family protein

Link Out ? help Back to Top
Phytozome	Araha.2341s0003.1.p

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]