PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.22728s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 113aa MW: 13043.1 Da PI: 8.1124 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.2 | 2.5e-17 | 6 | 91 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ffk l + s+ l++p f+ ++ +g + e+kt l++ s +Wevk+ ++++ lt+GWkeF+ a++L+ gD+vvF+ +++++ Araha.22728s0004.1.p 6 FFKPL--LPGFHSH-LTIPMAFFLKNiEGRH-EQKTAELRSdASKITWEVKI--DGQR----LTDGWKEFALAHDLRIGDIVVFRQERDMS 86 66777..6667777.*******999975554.55789998868889******..9888....***********************877788 PP E..EEEE CS B3 90 felvvkv 96 f +v++ Araha.22728s0004.1.p 87 F--HVTM 91 8..7766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.97 | 3 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-24 | 3 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.26E-21 | 4 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.91E-17 | 5 | 92 | No hit | No description |
SMART | SM01019 | 4.0E-22 | 6 | 95 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-12 | 14 | 89 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MAKQHFFKPL LPGFHSHLTI PMAFFLKNIE GRHEQKTAEL RSDASKITWE VKIDGQRLTD 60 GWKEFALAHD LRIGDIVVFR QERDMSFHVT MLGPSCCEIQ YGLCLNNQKN NLG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.22728s0004.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117514 | 1e-129 | AK117514.1 Arabidopsis thaliana At2g24650 mRNA for unknown protein, complete cds, clone: RAFL17-15-N14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020884495.1 | 2e-72 | putative B3 domain-containing protein REM15 | ||||
Refseq | XP_020885365.1 | 4e-72 | B3 domain-containing protein REM14 isoform X1 | ||||
Swissprot | Q8GYM4 | 1e-68 | REM14_ARATH; B3 domain-containing protein REM14 | ||||
TrEMBL | D7LIW0 | 5e-70 | D7LIW0_ARALL; Uncharacterized protein | ||||
TrEMBL | D7LIX6 | 7e-70 | D7LIX6_ARALL; Uncharacterized protein | ||||
STRING | scaffold_400548.1 | 8e-71 | (Arabidopsis lyrata) | ||||
STRING | scaffold_400563.1 | 1e-70 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 4e-71 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.22728s0004.1.p |