PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2250s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 332aa    MW: 36780.3 Da    PI: 7.8049
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2250s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.8e-18184238256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++k+q   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Araha.2250s0002.1.p 184 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKISLAKQLNLRPRQVEVWFQNRRARTK 238
                          678899***********************************************98 PP
2HD-ZIP_I/II128.33.2e-41184273191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlsk+q+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +
  Araha.2250s0002.1.p 184 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKISLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELR-T 272
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Araha.2250s0002.1.p 273 L 273
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-17163238IPR009057Homeodomain-like
PROSITE profilePS5007117.086180240IPR001356Homeobox domain
SuperFamilySSF466894.28E-18181249IPR009057Homeodomain-like
SMARTSM003891.4E-16182244IPR001356Homeobox domain
PfamPF000462.8E-15184238IPR001356Homeobox domain
CDDcd000864.94E-16184241No hitNo description
PROSITE patternPS000270215238IPR017970Homeobox, conserved site
SMARTSM003407.2E-26240283IPR003106Leucine zipper, homeobox-associated
PfamPF021836.9E-11240273IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MELALSLGDY TKKQLSFVEM NSKINNPSAS STSTSDKDLG FCMGLDVAFG GHKSLSSSSS  60
PSVEDEKKKP VPRAENSDGI RVSSPVDPPL QLQLHFPNWL PENSPQGGRM LSGAAMVAEE  120
EEEVVPSMSV SPPDSVTSSF QLDFGIKSYG YERRSNKRDI DDEVERSASR ASNEDNDEEN  180
GSTRKKLRLS KDQSAFLEDS FKEHSTLNPK QKISLAKQLN LRPRQVEVWF QNRRARTKLK  240
QTEVDCEYLK RCCESLTEEN RRLQKEVKEL RTLKTSTPFY MQLPATTLTM CPSCERVATS  300
AAQPATSAAH NLGLSTSSLI PVKPRPAKQV S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182188TRKKLRL
2232240RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2250s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4311820.0AJ431182.2 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT14 (hat14 gene).
GenBankAK2274230.0AK227423.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL14-07-H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879096.10.0homeobox-leucine zipper protein HAT14
SwissprotP466650.0HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLD7LZT30.0D7LZT3_ARALL; Homeobox-leucine zipper protein 14
STRINGscaffold_600659.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.10.0homeobox from Arabidopsis thaliana