PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.2210s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | CO-like | ||||||||
Protein Properties | Length: 348aa MW: 38502.7 Da PI: 5.9654 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.9 | 3.2e-06 | 15 | 57 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+++ + + +Ce ++ +lC +C H H++v Araha.2210s0007.1.p 15 RACDTCRSAACTVYCEADSAYLCTTCDARVHAAnrvasrHERV 57 57******99******************999556677778766 PP | |||||||
2 | zf-B_box | 32.3 | 2e-10 | 57 | 102 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+ +e+ ++ + C+ + lC C e+H+ H++vp+ Araha.2210s0007.1.p 57 VRVCQSCESAPAAFLCKADAASLCTACDAEIHSAnplarrHQRVPI 102 689*****************************66899999**9997 PP | |||||||
3 | CCT | 68.5 | 1.8e-23 | 278 | 320 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea++lRY+eK+ktRkF+K+irY+sRKa+Ae RpR+KGrF+k+ Araha.2210s0007.1.p 278 REARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKR 320 9****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.779 | 12 | 59 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.6E-8 | 12 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.23E-8 | 15 | 59 | No hit | No description |
PROSITE profile | PS50119 | 11.661 | 55 | 102 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.1E-8 | 57 | 102 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.15E-8 | 58 | 102 | No hit | No description |
SMART | SM00336 | 5.0E-11 | 60 | 102 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.44 | 278 | 320 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.2E-17 | 278 | 320 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MMLKEESNES GSWARACDTC RSAACTVYCE ADSAYLCTTC DARVHAANRV ASRHERVRVC 60 QSCESAPAAF LCKADAASLC TACDAEIHSA NPLARRHQRV PILPLSANSC SSMAPSETDA 120 DNDEDDREVA SWLLPNPGKN SGNQNNGFLF GVEYLDLVDY SSSMDNQFED HQYSHYQRSF 180 GGDGVVPLQV EESTSHLQQS QHNFQLGINY GFSSGAHYNN SLKDLNHSAS VSSMDISVVP 240 ESTASDITVQ HPRTTKETTD QLAGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY 300 ASRKAYAEIR PRIKGRFAKR IEIEAEAEEI FSTSLMSETG YGIVPSF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.2210s0007.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATHCOL2A | 0.0 | L81120.1 Arabidopsis thaliana Landsberg erecta COL2 (CONSTANS) mRNA, complete cds. | |||
GenBank | AY088779 | 0.0 | AY088779.1 Arabidopsis thaliana clone 949 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010485482.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 2 | ||||
Swissprot | Q96502 | 0.0 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | I3RT18 | 0.0 | I3RT18_ARALL; Putative flowering-time constans protein | ||||
STRING | XP_010485482.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2128 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 0.0 | CONSTANS-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Araha.2210s0007.1.p |
Publications ? help Back to Top | |||
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