PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.21766s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HB-other
Protein Properties Length: 1118aa    MW: 126248 Da    PI: 8.386
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.21766s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.92.9e-12553856
                          -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          ++ q ++Le+++ +++yp+ +e+e+L k+lgLt + V+ WF+ rR++ k
  Araha.21766s0002.1.p  5 SPVQGQALERFYLEKMYPTPKEMEDLGKSLGLTVKEVRGWFKRRRTRGK 53
                          677999****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.7E-9159IPR001356Homeobox domain
PROSITE profilePS5007112.746155IPR001356Homeobox domain
SuperFamilySSF466893.81E-10355IPR009057Homeodomain-like
CDDcd000867.38E-11351No hitNo description
Gene3DG3DSA:1.10.10.602.6E-11454IPR009057Homeodomain-like
PfamPF000467.2E-10553IPR001356Homeobox domain
PROSITE profilePS5082712.676351410IPR018501DDT domain
SMARTSM005715.5E-11351410IPR018501DDT domain
PfamPF027917.2E-10352405IPR018501DDT domain
PfamPF156121.0E-7631671IPR028942WHIM1 domain
PfamPF156133.3E-11754827IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1118 aa     Download sequence    Send to blast
MKRKSPVQGQ ALERFYLEKM YPTPKEMEDL GKSLGLTVKE VRGWFKRRRT RGKGVKSMAN  60
DGLGAKNRQT YDRSIMRSST SSRCVGEAVE ERCSVGTRKA SCQTLLPSSH ILAKIFRKDG  120
PSLGFEFDHL PSGARKASWL GTSSVDQQKQ KVARKRKISE LVDRTSQDCI KENGTVMKHG  180
IGKGLMTVWR VMNPNRRDVS SCIDLLDARA TLPQSSARNP PHQKKKQRQL ASILKQKLLQ  240
KKSTEKKRRS INREAELNKD ETQRAFKENC ELAADGEVFK ETCQTISILV DDEELEMRER  300
QERGNPSTCS CHHPSSGSHG CFLCKDLLPK FPPNSVLMRV PFGLHPWNSS PESVKKLFKV  360
VHFLYTYSVT LDICPFTLDD FTRAFHDKDS LLLGKIHLSL LKLLLLDVET ELQRGSFSNL  420
SISCKFLALL QSVESQILIL DMWRDSLNSL TWTEILRQIL VAAGYGSVKC AVQSEDLSKE  480
RRLMKKYGLR LGTLKGELFR ILNDKGNNGL KISELASAPE VAVLNFATAP EERENSICST  540
LASDITLFEK ISESTYRVRV NCFSEDPDKS QSDSDNSGSV DDESDDCSIS SGDEIEHVSE  600
NPALRKVKCR KRRKHKSKTR EVCSEIDESH PGEPWLLGLM EGEYSDLSIE EKLDVFVALI  660
DLLSSGSTIR MEDLPRAMVG CAPSIYSHGS GGKIKRSSSN QYSYPRGSWV HGGELHGKKA  720
LSKLSDSHPV DSSSIVGAFA KLAGDKANNV HPMQSVYLGS DRRFNRYWLF LGPCNANDPG  780
HRCVFFESSE DGHWEVINNK EALRALLSVL DDRGRREARL IESLEKRESF LCQAMLNRQV  840
AQSESAHFTD IVREDSSSPV SDIDNNLCLS EIANDQFSSQ HAAIVFEIGS KREKSLLWSL  900
LQEFDEWIWA NFNFNLNAVK HRRRSYLDSL TRCKSCHDLY WRDEKHCKIC HATFEVDIDL  960
EERYAIHAAT CSRKEECDTF PDHKVLSSQL QSLKAAVYAI ESAMPEDALI GAWRKSAHRL  1020
WAKRLRRSST VSEIMQVIGD FVGAINEDWL WHSSDQGQTL MGEIICCFSS MPQTTSAIAL  1080
WLVKLDTLIA PYVEKAQPER NQPLCRTRNT SRRASKR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.21766s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0496400.0AL049640.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project).
GenBankAL1615340.0AL161534.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877026.10.0homeobox-DDT domain protein RLT3 isoform X2
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLA0A178UY470.0A0A178UY47_ARATH; Uncharacterized protein
STRINGAT4G12750.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96382125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator