PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.21693s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 381aa    MW: 43071.1 Da    PI: 6.1252
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.21693s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-08283330448
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                           WT +E  +lvd++  +G g W+ I +++     +Rt+ +++++w+++l
  Araha.21693s0004.1.p 283 WTVDEVMKLVDGISHFGVGKWTDIKNHFFhsaAHRTPVDIRDKWRNLL 330
                           **********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-13275336IPR009057Homeodomain-like
PROSITE profilePS5129416.008275334IPR017930Myb domain
SMARTSM007171.9E-9279332IPR001005SANT/Myb domain
SuperFamilySSF466893.14E-17282347IPR009057Homeodomain-like
CDDcd116605.26E-20283331No hitNo description
PfamPF139212.1E-8283345No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGPFGIDTTP DFPDTFAGFK SVSVENVCHS VEDKMSDMKH FLMDPNHDNT AVDSFLGLGM  60
ENMGLSSTME EFSHGFDFSF LPDFGGLNSC STKDVEAGLK FEILDGFLDG VDEVEDIYAS  120
HDLSSICNHF LPETEVKKKV SELDGDPYGL MNLSSESFSP GISGSIGLSE CEKVKDSLDS  180
NESEDDKKPL STFIGSWVKQ GKNRKKNLLN TACSRLDSSR ERMSCVSYDF RPRKGPMKKY  240
IHISSENTFS DDQLASSESE DDISVVTKTS RTRSDRRKHQ RLWTVDEVMK LVDGISHFGV  300
GKWTDIKNHF FHSAAHRTPV DIRDKWRNLL KASYNDKHNY REAEEKRKSV ARSIPKEILH  360
RVRELASLHP YPEKERKRNV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.21693s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2304480.0AK230448.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-48-F14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883838.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC9315712
TrEMBLD7LJB30.0D7LJB3_ARALL; Uncharacterized protein
STRINGBostr.23794s0389.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.27e-22TRF-like 6