PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2163s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 139aa    MW: 15855.2 Da    PI: 4.7718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2163s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-191364256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkklege 56
                         +y+GVr ++ +g+++AeIrd      ++ +r++lg+f tae+Aa+a+++a+  ++ge
  Araha.2163s0003.1.p 13 KYRGVRKRP-WGKYAAEIRD----SaRHgARVWLGTFNTAEDAARAYDRAAFTMRGE 64
                         8********.**********....33236**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-141364IPR001471AP2/ERF domain
CDDcd000186.29E-181372No hitNo description
SMARTSM003804.7E-351377IPR001471AP2/ERF domain
PROSITE profilePS5103223.7231371IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-311373IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-231373IPR016177DNA-binding domain
PRINTSPR003671.5E-111425IPR001471AP2/ERF domain
PRINTSPR003671.5E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MEHRESYNTN EVKYRGVRKR PWGKYAAEIR DSARHGARVW LGTFNTAEDA ARAYDRAAFT  60
MRGERAILNF PHEYQMMKDG PNDSRENEVA SSSSEYRGGG GGDGKEVIEF EYLDDSLLEE  120
LLDYGESYNQ DAWNNANR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-351311714114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00373DAPTransfer from AT3G23220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2163s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256081e-154AB025608.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15.
GenBankAY9741961e-154AY974196.1 Arabidopsis thaliana clone At3g23220 AP2/EREBP transcription factor mRNA, complete cds.
GenBankCP0026861e-154CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888865.14e-71ethylene-responsive transcription factor ERF095
SwissprotQ9LTC67e-53ERF95_ARATH; Ethylene-responsive transcription factor ERF095
TrEMBLA0A0D3D5K17e-64A0A0D3D5K1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ELV97e-64A0A3P6ELV9_BRAOL; Uncharacterized protein
STRINGBostr.19424s0321.1.p1e-71(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.17e-47ERF family protein
Publications ? help Back to Top
  1. Quan R, et al.
    EIN3 and SOS2 synergistically modulate plant salt tolerance.
    Sci Rep, 2017. 7: p. 44637
    [PMID:28300216]