PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.21615s0002.4.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 447aa    MW: 47458.6 Da    PI: 8.8557
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.21615s0002.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.7e-114973327
                          S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                           + C +++rtG C yG+rC+++H++
  Araha.21615s0002.4.p 49 APDCAYYMRTGVCGYGNRCRYNHPR 73
                          589********************96 PP
2zf-CCCH41.91.7e-1393118227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C+f+++tGtCk+G++CkF+H++
  Araha.21615s0002.4.p  93 GEPPCQFYLKTGTCKFGASCKFHHPK 118
                           579*********************96 PP
3zf-CCCH37.93e-12268294127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C+++++tG Ck+G +CkF+H++
  Araha.21615s0002.4.p 268 PGEPECQYYLKTGDCKFGTSCKFHHPR 294
                           5799*********************96 PP
4zf-CCCH32.51.5e-10315340227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +  +C f+ ++G+Ck+G++CkF H++
  Araha.21615s0002.4.p 315 GVQRCTFYVQNGFCKFGSTCKFDHPM 340
                           6779********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-54673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8824674IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-84973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-65175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-55273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.15591119IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-791118IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-1193118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-694119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-596117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356267295IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5267294IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9269294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6272296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5273295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23313341IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5313340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6315344IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-8315340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-5319339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MYARNPPING SQSAQAPEWT PGDADTTGLE ESMWRLGLGS ESYPERPGAP DCAYYMRTGV  60
CGYGNRCRYN HPRDRASVEA TVRATGQYPE RLGEPPCQFY LKTGTCKFGA SCKFHHPKNA  120
GGSMSHVPLN IYGYPVREPA GTTVPPPPPP PASAPQFYPS VQSLMPDQYG GPSSSLRVAR  180
TLLPGSYMQG AYGPMLLTPG VVPIPGWSPY SAPVSPALSP GAQHAVGATS LYGVTQLPST  240
TPSLPGVYPS LSSPTGVIQK EQAFPERPGE PECQYYLKTG DCKFGTSCKF HHPRDRVPPR  300
ANCILSPIGL PLRPGVQRCT FYVQNGFCKF GSTCKFDHPM GTIRYNPSAS SLADAPVAPY  360
PVSSLLGALA AAPSSSSTEL ITGGAKDPYL TGVPTSRSTS NISAGLIFSQ SGGSIPFSDL  420
QLSSQTSLPP TGSRITRQGR EIRRSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.21615s0002.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303910.0BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294140.10.0zinc finger CCCH domain-containing protein 32 isoform X2
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLR0HSN80.0R0HSN8_9BRAS; Uncharacterized protein
STRINGBostr.13208s0032.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.20.0C3H family protein