PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.21615s0002.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 473aa    MW: 50446 Da    PI: 8.7527
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.21615s0002.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.2e-114973327
                          S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                           + C +++rtG C yG+rC+++H++
  Araha.21615s0002.2.p 49 APDCAYYMRTGVCGYGNRCRYNHPR 73
                          589********************96 PP
2zf-CCCH41.81.8e-1393118227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C+f+++tGtCk+G++CkF+H++
  Araha.21615s0002.2.p  93 GEPPCQFYLKTGTCKFGASCKFHHPK 118
                           579*********************96 PP
3zf-CCCH35.12.2e-11142164527
                           --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                           +C+++++tG+Ck+G +CkF+H++
  Araha.21615s0002.2.p 142 ECSYYLKTGQCKFGITCKFHHPQ 164
                           7********************97 PP
4zf-CCCH37.83.2e-12294320127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C+++++tG Ck+G +CkF+H++
  Araha.21615s0002.2.p 294 PGEPECQYYLKTGDCKFGTSCKFHHPR 320
                           5799*********************96 PP
5zf-CCCH32.41.6e-10341366227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +  +C f+ ++G+Ck+G++CkF H++
  Araha.21615s0002.2.p 341 GVQRCTFYVQNGFCKFGSTCKFDHPM 366
                           6779********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.8824674IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-54673IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-84973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-65175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-55273IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-791118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.15591119IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-1193118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-694119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-596117IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-5137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732137165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5141165IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-9142164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4143163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356293321IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5293320IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9295320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6298322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5299321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23339367IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5339366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6341370IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8341366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-5345365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MYARNPPING SQSAQAPEWT PGDADTTGLE ESMWRLGLGS ESYPERPGAP DCAYYMRTGV  60
CGYGNRCRYN HPRDRASVEA TVRATGQYPE RLGEPPCQFY LKTGTCKFGA SCKFHHPKNA  120
GGSMSHVPLN IYGYPVREGD NECSYYLKTG QCKFGITCKF HHPQPAGTTV PPPPPPPASA  180
PQFYPSVQSL MPDQYGGPSS SLRVARTLLP GSYMQGAYGP MLLTPGVVPI PGWSPYSAPV  240
SPALSPGAQH AVGATSLYGV TQLPSTTPSL PGVYPSLSSP TGVIQKEQAF PERPGEPECQ  300
YYLKTGDCKF GTSCKFHHPR DRVPPRANCI LSPIGLPLRP GVQRCTFYVQ NGFCKFGSTC  360
KFDHPMGTIR YNPSASSLAD APVAPYPVSS LLGALAAAPS SSSTELITGG AKDPYLTGVP  420
TSRSTSNISA GLIFSQSGGS IPFSDLQLSS QTSLPPTGSR ITRQGREIRR SF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.21615s0002.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303910.0BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294141.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_023639387.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_023639388.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_023639389.10.0zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLR0HC920.0R0HC92_9BRAS; Uncharacterized protein
STRINGBostr.13208s0032.1.p0.0(Boechera stricta)
STRINGXP_006294141.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein