PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.21335s0005.2.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB_related

Protein Properties

Length: 1130aa MW: 127344 Da PI: 8.8449

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.21335s0005.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.1	9.6e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e+++++ +++G++ Wk++a+ + R+++++ Araha.21335s0005.2.p 46 QWSKEELERFYEGYRKFGKE-WKKVAAFVH-SRSAEMV 81 6*****************.******9.9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.31E-10	42	92	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-4	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-5	46	82	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-7	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	3.31E-5	47	89	No hit	No description
SMART	SM01135	4.7E-61	606	707	IPR033471	DIRP domain
Pfam	PF06584	6.1E-30	606	705	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1130 aa Download sequence Send to blast
MAPSRSKKSK YKKKPRAKAV SPHKDEDSMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR 60 KFGKEWKKVA AFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLNAMMTD HYSVLHGGSD 120 SEQENNEGIE TLRSAPKRSR VKSSDNPSIG LEGLSDRLQF RSSSGLMPSL KKRRTETMPR 180 AVGKRTPRIP ISYTLEKDTR ERYLSPVKRG LNQKGDDTDD DMEHEIALAL AEASQRGGST 240 KNSHTPNRKA KMYPPDKKGE RMRADIDLAI AKLHATDMED VRCEPSLGST EADNGDYSGG 300 RNDLMHGEGS SAVEKQQKGR TYYRRRLGIK EEDAKEACSG TDEAPSLGAP DEKFEPERDG 360 KSLKFTYKVS RRKSKKSLFT ADEDTACDAL QTLADLSLMM PETATDTESS VQAEEKRAGK 420 AYVSDFKGTD PASMSKSSSL RNSKQRRSGT NDLCDTEPER KSPSSSLIRK RRQKVLPAKL 480 QVLKDELAAS SKVIKPSNNK GIGEENKPVG RGKRSASIRN SHEKKSVKPH DRTSSSNNIV 540 EEDESAPSNA VIKKQVNLPT KVRSRRKIVT EKPLTIDDGK ISETLEKFSH YTSSFRARRW 600 CLFEWFYSAI DYPWFARQEF VEYLDHVGLG HVPRLTRVEW GVIRSSLGKP RRFSEQFLKE 660 EKEKLYLYRD SVRKHYDELN TGMREGLPMD LARPLNVSQR VISLHPKSRE IHDGSVLTVD 720 HCRYRIQFDH PELGVEFVKD TECMPLNPLE NMPASLARHY AFSNYHIQNP VEEKMHERAK 780 ESMLEGYPKL SCETGHLLPS PNYNISNSLK QEKVDISSSN PQAQDGVDEA LDLQLFNSQP 840 SSIGHIQARE ADVQALSELT RALDKKELVL RELKCMNDEV VESQKDGHNA LKDSESFKKQ 900 YAAVLFQLSE INEQVSLALL GLRQRNTYQE NVPYASIKRM NKSGEPDGQL TYVDNYVSDT 960 NGFHVSEIVE SSRIKARKMV YRAVQALALL RKDENNNVNM EEAIDFVNNQ LSIDQTEGSS 1020 VQQTQGAQDQ RLPSTPNPPS STPANDSHLN PPDQNDLQIP YELVSRCMAT LLMIQKCTER 1080 QFPPSEVAQV LDSAVASLQP CCSQNLPIYT EIQKCMGIIR NQILALVPS*

Sequence ? help Back to Top

Protein Sequence Length: 1130 aa Download sequence Send to blast

MAPSRSKKSK YKKKPRAKAV SPHKDEDSMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR  60
KFGKEWKKVA AFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLNAMMTD HYSVLHGGSD  120
SEQENNEGIE TLRSAPKRSR VKSSDNPSIG LEGLSDRLQF RSSSGLMPSL KKRRTETMPR  180
AVGKRTPRIP ISYTLEKDTR ERYLSPVKRG LNQKGDDTDD DMEHEIALAL AEASQRGGST  240
KNSHTPNRKA KMYPPDKKGE RMRADIDLAI AKLHATDMED VRCEPSLGST EADNGDYSGG  300
RNDLMHGEGS SAVEKQQKGR TYYRRRLGIK EEDAKEACSG TDEAPSLGAP DEKFEPERDG  360
KSLKFTYKVS RRKSKKSLFT ADEDTACDAL QTLADLSLMM PETATDTESS VQAEEKRAGK  420
AYVSDFKGTD PASMSKSSSL RNSKQRRSGT NDLCDTEPER KSPSSSLIRK RRQKVLPAKL  480
QVLKDELAAS SKVIKPSNNK GIGEENKPVG RGKRSASIRN SHEKKSVKPH DRTSSSNNIV  540
EEDESAPSNA VIKKQVNLPT KVRSRRKIVT EKPLTIDDGK ISETLEKFSH YTSSFRARRW  600
CLFEWFYSAI DYPWFARQEF VEYLDHVGLG HVPRLTRVEW GVIRSSLGKP RRFSEQFLKE  660
EKEKLYLYRD SVRKHYDELN TGMREGLPMD LARPLNVSQR VISLHPKSRE IHDGSVLTVD  720
HCRYRIQFDH PELGVEFVKD TECMPLNPLE NMPASLARHY AFSNYHIQNP VEEKMHERAK  780
ESMLEGYPKL SCETGHLLPS PNYNISNSLK QEKVDISSSN PQAQDGVDEA LDLQLFNSQP  840
SSIGHIQARE ADVQALSELT RALDKKELVL RELKCMNDEV VESQKDGHNA LKDSESFKKQ  900
YAAVLFQLSE INEQVSLALL GLRQRNTYQE NVPYASIKRM NKSGEPDGQL TYVDNYVSDT  960
NGFHVSEIVE SSRIKARKMV YRAVQALALL RKDENNNVNM EEAIDFVNNQ LSIDQTEGSS  1020
VQQTQGAQDQ RLPSTPNPPS STPANDSHLN PPDQNDLQIP YELVSRCMAT LLMIQKCTER  1080
QFPPSEVAQV LDSAVASLQP CCSQNLPIYT EIQKCMGIIR NQILALVPS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.21335s0005.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ583497	0.0	AJ583497.1 Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020887223.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_020887224.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_020887225.1	0.0	protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	D7L0S7	0.0	D7L0S7_ARALL; Always early protein 3
STRING	fgenesh2_kg.3__2365__AT3G21430.2	0.0	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Araha.21335s0005.2.p

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]