PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.21335s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 1130aa MW: 127344 Da PI: 8.8449 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.1 | 9.6e-09 | 46 | 81 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e+++++ +++G++ Wk++a+ + R+++++ Araha.21335s0005.1.p 46 QWSKEELERFYEGYRKFGKE-WKKVAAFVH-SRSAEMV 81 6*******************.********9.9999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.31E-10 | 42 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-4 | 43 | 91 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-5 | 46 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-7 | 46 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.31E-5 | 47 | 89 | No hit | No description |
SMART | SM01135 | 4.7E-61 | 606 | 707 | IPR033471 | DIRP domain |
Pfam | PF06584 | 6.1E-30 | 606 | 705 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1130 aa Download sequence Send to blast |
MAPSRSKKSK YKKKPRAKAV SPHKDEDSMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR 60 KFGKEWKKVA AFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLNAMMTD HYSVLHGGSD 120 SEQENNEGIE TLRSAPKRSR VKSSDNPSIG LEGLSDRLQF RSSSGLMPSL KKRRTETMPR 180 AVGKRTPRIP ISYTLEKDTR ERYLSPVKRG LNQKGDDTDD DMEHEIALAL AEASQRGGST 240 KNSHTPNRKA KMYPPDKKGE RMRADIDLAI AKLHATDMED VRCEPSLGST EADNGDYSGG 300 RNDLMHGEGS SAVEKQQKGR TYYRRRLGIK EEDAKEACSG TDEAPSLGAP DEKFEPERDG 360 KSLKFTYKVS RRKSKKSLFT ADEDTACDAL QTLADLSLMM PETATDTESS VQAEEKRAGK 420 AYVSDFKGTD PASMSKSSSL RNSKQRRSGT NDLCDTEPER KSPSSSLIRK RRQKVLPAKL 480 QVLKDELAAS SKVIKPSNNK GIGEENKPVG RGKRSASIRN SHEKKSVKPH DRTSSSNNIV 540 EEDESAPSNA VIKKQVNLPT KVRSRRKIVT EKPLTIDDGK ISETLEKFSH YTSSFRARRW 600 CLFEWFYSAI DYPWFARQEF VEYLDHVGLG HVPRLTRVEW GVIRSSLGKP RRFSEQFLKE 660 EKEKLYLYRD SVRKHYDELN TGMREGLPMD LARPLNVSQR VISLHPKSRE IHDGSVLTVD 720 HCRYRIQFDH PELGVEFVKD TECMPLNPLE NMPASLARHY AFSNYHIQNP VEEKMHERAK 780 ESMLEGYPKL SCETGHLLPS PNYNISNSLK QEKVDISSSN PQAQDGVDEA LDLQLFNSQP 840 SSIGHIQARE ADVQALSELT RALDKKELVL RELKCMNDEV VESQKDGHNA LKDSESFKKQ 900 YAAVLFQLSE INEQVSLALL GLRQRNTYQE NVPYASIKRM NKSGEPDGQL TYVDNYVSDT 960 NGFHVSEIVE SSRIKARKMV YRAVQALALL RKDENNNVNM EEAIDFVNNQ LSIDQTEGSS 1020 VQQTQGAQDQ RLPSTPNPPS STPANDSHLN PPDQNDLQIP YELVSRCMAT LLMIQKCTER 1080 QFPPSEVAQV LDSAVASLQP CCSQNLPIYT EIQKCMGIIR NQILALVPS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.21335s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ583497 | 0.0 | AJ583497.1 Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020887223.1 | 0.0 | protein ALWAYS EARLY 3 isoform X1 | ||||
Refseq | XP_020887224.1 | 0.0 | protein ALWAYS EARLY 3 isoform X1 | ||||
Refseq | XP_020887225.1 | 0.0 | protein ALWAYS EARLY 3 isoform X1 | ||||
Swissprot | Q6A332 | 0.0 | ALY3_ARATH; Protein ALWAYS EARLY 3 | ||||
TrEMBL | D7L0S7 | 0.0 | D7L0S7_ARALL; Always early protein 3 | ||||
STRING | fgenesh2_kg.3__2365__AT3G21430.2 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12714 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Araha.21335s0005.1.p |
Publications ? help Back to Top | |||
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