PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.21185s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 720aa    MW: 79371.4 Da    PI: 5.9857
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.21185s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000475565931355
                           HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           R+ i +++ eLrel+P+ a      K s  + Le++++++  Lq
  Araha.21185s0005.1.p 556 RQLIQDRIKELRELVPNgA------KCSIDSLLERTIKHMLFLQ 593
                           67799************77......5666667888888877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-9644IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142151.0E-2060149IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00228537594No hitNo description
PROSITE profilePS5088811.02543592IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-5556611IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-4556611IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MGSTSQEILR SFCSSTDWNY AVFWQLKHRG SRMVLTLEDA YYDHHGTNIH GAHDPLGLAV  60
AKMSYHVYSL GEGIVGQVAV SGEHQWVFPE NYDNCHSAFE FHNVWESQIS AGIKTILVVA  120
VGRYGVVQLG SLCKVNEDVN LVNHIRHLFL ALRDPLADHA ANLMQCNMNN SLLLPNMPSE  180
GLHAEAFPDC SGEVDKAMDV EESNILTQYK TRRSDSMPYN TPSSCLVMEK TAQVGGREVV  240
QGSTCGSYSG VTCGFPVDLV GAKHENQVGT NIISDAPHVG MTSGCKDPRG LDLNFHKYMK  300
NHVLNNTSSS SLAIEAERLI TGQSYPGLDS TLQAMSRTDK ESSYQNEVFQ LSENHGNKDI  360
KETERMLGRN CETSRFDALM SSGYTFGGSE LLEALGSAFK QASTGQEELL KSEHGSTMRP  420
TDDMSHSQLT FDSGPENLLD AVVANVCQSD GNSRDDMLSS RSVQSLLTSM ELTEPSGQKK  480
HNIFNPIDSA MNQLPLAEVD IQQNSSDICG AFSSIGFSST YPSSSSDQFQ TSLDMPKKNK  540
KRAKPGESSR PRPRDRQLIQ DRIKELRELV PNGAKCSIDS LLERTIKHML FLQNVTKHAD  600
KLSKSANAKM QQKETGMQGS SCAVEVGGHL QVCSIIVENL NKQGIVLIEM LCEECSHFLE  660
IANVIRSLDL IILRGITETQ GEKTWICFVT ESQNSKVMQR MDILWSLVQI FQPKANGKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate root development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.21185s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9548080.0AY954808.1 Arabidopsis thaliana hypothetical protein (At2g31280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879316.10.0transcription factor bHLH155 isoform X1
SwissprotQ58G010.0LHWL3_ARATH; Transcription factor bHLH155
TrEMBLD7LD130.0D7LD13_ARALL; Predicted protein
STRINGAl_scaffold_0004_15850.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20832030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.10.0conserved peptide upstream open reading frame 7
Publications ? help Back to Top
  1. Ohashi-Ito K,Matsukawa M,Fukuda H
    An atypical bHLH transcription factor regulates early xylem development downstream of auxin.
    Plant Cell Physiol., 2013. 54(3): p. 398-405
    [PMID:23359424]