PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.21185s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 203aa MW: 22688.3 Da PI: 5.4796

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.21185s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.1	6.2e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C +Ck+lrrkC+++Cv+apyf+ e+ +++f ++hk+FGasn +kl+++lp+++r da++++ yeA+ r++dP+yG+v+ i++lqqq+ Araha.21185s0002.1.p 7 PCGGCKFLRRKCVEGCVFAPYFCYEEgSSNFSAIHKVFGASNFSKLISHLPDHDRCDAVRTISYEAHSRLHDPIYGCVSQIFSLQQQVV 95 7*********************9979********************************************************* PP DUF260 89 qlkaelallkee 100 +l+a+++ll+ee Araha.21185s0002.1.p 96 SLQAQVVLLREE 107 ****999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.347	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.6E-35	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSSNFSAI HKVFGASNFS KLISHLPDHD 60 RCDAVRTISY EAHSRLHDPI YGCVSQIFSL QQQVVSLQAQ VVLLREEASR RSPQEDPGCN 120 MKQQEKLIAQ QMPQDLHNWF HHGILDSDLD PMSGATHEHE RSMDRNESLC SSNESLYYQD 180 SGGQFSLVCL STSDYFVTEI EP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-36	3	101	7	104	LOB family transfactor Ramosa2.1
5ly0_B	8e-36	3	101	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.21185s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473850	0.0	AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002879319.1	1e-125	LOB domain-containing protein 14
Swissprot	Q9SJW5	1e-122	LBD14_ARATH; LOB domain-containing protein 14
TrEMBL	D7LD16	1e-124	D7LD16_ARALL; LOB domain protein 14
STRING	fgenesh1_pg.C_scaffold_4001244	1e-125	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31310.1	1e-107	LOB domain-containing protein 14

Link Out ? help Back to Top
Phytozome	Araha.21185s0002.1.p

Publications ? help Back to Top
Jeon E, et al. LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis. Plant Cell Physiol., 2017. 58(12): p. 2190-2201 [PMID:29040694]