PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.21054s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 226aa MW: 25264 Da PI: 6.9604 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.1e-17 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl Araha.21054s0001.1.p 21 KGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYL 68 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.9e-17 | 74 | 117 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++++ ++++++G++ W++Ia++++ gRt++++k++w++ Araha.21054s0001.1.p 74 RGNITPEEQLIIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 117 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.998 | 16 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.49E-30 | 19 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-12 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 21 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-23 | 22 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.29E-10 | 23 | 68 | No hit | No description |
PROSITE profile | PS51294 | 24.865 | 69 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-15 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-16 | 74 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 76 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.37E-12 | 78 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MEKRGGSSGG SGSSAEAEVR KGPWTMEEDL ILINYIANHG DGVWNSLAKS AGLKRTGKSC 60 RLRWLNYLRP DVRRGNITPE EQLIIMELHA KWGNRWSKIA KHLPGRTDNE IKNFWRTRIQ 120 KYIKQADVTT TSSVGSHHSS EINDQAASTS SHNVFCTQDQ AMETYSPTPT SYQHTNMEFN 180 YGNYSAAAAT ATVDYPIPMT VDDQTGENYW GMDDIWSSMH LLNGN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-26 | 18 | 123 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL. Acts redundantly with MYB24 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB24 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:11967090, ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.21054s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK118439 | 0.0 | AK118439.1 Arabidopsis thaliana At3g27810 mRNA for putative myb family transcription factor (Atmyb3), complete cds, clone: RAFL19-68-M03. | |||
GenBank | AY519589 | 0.0 | AY519589.1 Arabidopsis thaliana MYB transcription factor (At3g27810) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002875402.1 | 1e-159 | transcription factor MYB21 | ||||
Swissprot | Q9LK95 | 1e-160 | MYB21_ARATH; Transcription factor MYB21 | ||||
TrEMBL | D7LPK4 | 1e-157 | D7LPK4_ARALL; ATMYB21 | ||||
STRING | fgenesh1_pm.C_scaffold_5000445 | 1e-158 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27810.1 | 1e-150 | myb domain protein 21 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.21054s0001.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|