PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.21041s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 355aa    MW: 40747.1 Da    PI: 10.1812
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.21041s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.5e-16692197
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                          ffk l     + s+ l++p  f+ ++ +g  +e+kt  l++  s ++W+vkl  ++++    lt+GW eF+ a++L+ gD++vF+ +++++
  Araha.21041s0001.1.p  6 FFKPL--LPGFHSH-LTIPVAFFFKNiEGR-HEHKTAELRSdASKKTWKVKL--DGQR----LTNGWTEFALAHDLRIGDIIVFRQERDMT 86
                          66666..5667777.*******98997444.46678888886899*******..9888....***********************766677 PP

                          E..EEEEE CS
                    B3 90 felvvkvf 97
                          f  +v+++
  Araha.21041s0001.1.p 87 F--HVTML 92
                          7..87766 PP
2B373.42.8e-23131215388
                           EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            + +++++l+ + l lp  f++++g++k+++ +++l +e+grsW+v l+ +k+ g++++++GW++F++angL++g f++Fkl +r 
  Araha.21041s0001.1.p 131 VANVTPSNLRYDSLNLPMCFVRANGLDKRCG-EMILINEKGRSWTVALKRKKSCGTTYIRRGWRSFCHANGLRAGSFFTFKLFQRG 215
                           56789999********************998.****************98999999*************************98753 PP
3B363.43.5e-20252348199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f+kv++++++  ++ l+lp +f++ +g++++  k++++ d++g +W+ +l ++ k +r+ l++GWkeF+ an++k g++++++l+++ +
  Araha.21041s0001.1.p 252 FVKVTLTPYNVGQSKLILPVRFTKVNGIIEA--KKMSFLDKHGVKWSTNLWFEEKCKRMRLSGGWKEFCYANDVKIGESIILELIWEAD 338
                           899999999999999********99999965..58***************8899999*****************************999 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           ++ v+k+++k
  Araha.21041s0001.1.p 339 RSSVLKFCSK 348
                           9899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.252395IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-213107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-204101IPR015300DNA-binding pseudobarrel domain
CDDcd100175.73E-15592No hitNo description
SMARTSM010193.0E-22695IPR003340B3 DNA binding domain
PfamPF023627.0E-111489IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-23123213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-21127218IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.467129226IPR003340B3 DNA binding domain
CDDcd100175.93E-23129222No hitNo description
SMARTSM010195.4E-26130224IPR003340B3 DNA binding domain
PfamPF023621.6E-21131216IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-22244348IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21248347IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-19251346No hitNo description
PfamPF023626.1E-20252348IPR003340B3 DNA binding domain
SMARTSM010191.5E-21252349IPR003340B3 DNA binding domain
PROSITE profilePS5086313.535252348IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MVNQHFFKPL LPGFHSHLTI PVAFFFKNIE GRHEHKTAEL RSDASKKTWK VKLDGQRLTN  60
GWTEFALAHD LRIGDIIVFR QERDMTFHVT MLEPSCCEIQ YVPCLDTQNN LGKIQRKKKE  120
AESSLDLSCF VANVTPSNLR YDSLNLPMCF VRANGLDKRC GEMILINEKG RSWTVALKRK  180
KSCGTTYIRR GWRSFCHANG LRAGSFFTFK LFQRGGTLGL RLEEEANAID NNQDERSSRH  240
VKASSLPSQN RFVKVTLTPY NVGQSKLILP VRFTKVNGII EAKKMSFLDK HGVKWSTNLW  300
FEEKCKRMRL SGGWKEFCYA NDVKIGESII LELIWEADRS SVLKFCSKVK PENK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.21041s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1175149e-93AK117514.1 Arabidopsis thaliana At2g24650 mRNA for unknown protein, complete cds, clone: RAFL17-15-N14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466695.20.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein REM14
SwissprotQ8GYM41e-119REM14_ARATH; B3 domain-containing protein REM14
TrEMBLD7LCR30.0D7LCR3_ARALL; Uncharacterized protein
TrEMBLD7LE940.0D7LE94_ARALL; Uncharacterized protein
STRINGscaffold_400825.10.0(Arabidopsis lyrata)
STRINGscaffold_400948.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-122B3 family protein