PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.20597s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 442aa    MW: 49809.6 Da    PI: 9.7385
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.20597s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.4e-07129171346
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            WT+eE ++l + ++ +  + +  Ia +++  Rt +++k+r+++
  Araha.20597s0002.1.p 129 VWTKEETDQLFEFCQNFDLR-FVVIADRFPVSRTVEELKDRYYS 171
                           6*******************.*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162826.4E-30102176IPR032563DAMP1, SANT/Myb-like domain
SMARTSM007179.5E-9126175IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-6126177IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-6129172IPR009057Homeodomain-like
CDDcd116582.79E-19130173No hitNo description
PfamPF054992.6E-7319386IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MGGTDAKDIL GLPKTPLSLT QEKKSRPQKE SHRKPDGISR EVYALTGGVA PLMPSIDLKR  60
RPPADEKVAW KWLSFTNSAR KDDLQLYHWV RVVNDVPPTG DYSFAKYNKS VDILKYTDEE  120
YENHLTDPVW TKEETDQLFE FCQNFDLRFV VIADRFPVSR TVEELKDRYY SVNRALLRAR  180
AQSPADVANH PLMKEPYDIT RDRERKRALS MVLSQSRHQE KKDAEILAEA KRITEMRLAA  240
RRAEEPDVSA NENAGLDKAD GVVPGRSVSP TSNSQLPATA VAPSTLTMAD YASTLASLRM  300
LHVYLRTYGL EQMVQAASSA VGLRTIKRVE QTLQDLGVNL KPKVPTKTVC DEHLELRKEI  360
LTLLNLQKQL QYKESEGSSH REGSYAAMPD TPKDRVFASD PFSFGAERPI KKDQKRKGPG  420
RQADTPSPAH KRPRKLKASD L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A2e-18101181488DNA methyltransferase 1-associated protein 1
4iej_A2e-18101181488DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.20597s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0640240.0AY064024.1 Arabidopsis thaliana unknown protein (At2g47210) mRNA, complete cds.
GenBankAY0966100.0AY096610.1 Arabidopsis thaliana unknown protein (At2g47210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880287.10.0SWR1-complex protein 4 isoform X2
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLD7LG020.0D7LG02_ARALL; Myb family transcription factor
STRINGscaffold_403698.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85432435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]