PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.2057s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 259aa    MW: 29449.1 Da    PI: 5.9842
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.2057s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg WT+eEd++lv ++ ++G g+W+  + + g++R++k+c++rw++yl
  Araha.2057s0002.1.p 14 RGEWTEEEDQKLVAYIDEYGVGDWRFLPGRAGLRRCGKSCRLRWLNYL 61
                         89********************************************97 PP
2Myb_DNA-binding55.11.8e-1767111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g++T++E++ +++++  lG++ W++Ia+ m+ +R+++++k++w++ 
  Araha.2057s0002.1.p  67 KGKFTPQEEQAIINLHSVLGNR-WAAIAQQMP-NRSDNDIKNHWNSC 111
                          79********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.06961IPR017930Myb domain
SuperFamilySSF466898.11E-3012108IPR009057Homeodomain-like
SMARTSM007177.4E-141363IPR001005SANT/Myb domain
PfamPF002498.5E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-231568IPR009057Homeodomain-like
CDDcd001671.11E-91661No hitNo description
PROSITE profilePS5129426.20262116IPR017930Myb domain
SMARTSM007177.8E-1666114IPR001005SANT/Myb domain
PfamPF002492.7E-1667111IPR001005SANT/Myb domain
CDDcd001675.28E-1069109No hitNo description
Gene3DG3DSA:1.10.10.608.8E-2669116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRATWFDAD GTKRGEWTEE EDQKLVAYID EYGVGDWRFL PGRAGLRRCG KSCRLRWLNY  60
LRPGIKKGKF TPQEEQAIIN LHSVLGNRWA AIAQQMPNRS DNDIKNHWNS CLKKRLERNG  120
LDPMTHQPII NNLAVKTPLF NTECSSSSSA RASPSSSSFS SSSGSAHLLN KIATGISSRQ  180
HCVDDMIKNI LSDPRITSIH GQDDLEVEEL KKDDEKIIAS DYQEDDFLMW DDEKIRRFME  240
EIGVMELETM SYDGAYRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-29141177109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.2057s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890296.11e-170transcription factor MYB122
SwissprotQ9LXF19e-58MYB16_ARATH; Transcription factor MYB16
TrEMBLD7KH611e-168D7KH61_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_10016921e-169(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.12e-88myb domain protein 47
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]